miRNA display CGI


Results 1 - 20 of 491 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6562 5' -55.5 NC_001847.1 + 40147 1.07 0.002828
Target:  5'- gGACACAUGCGCGCAGCUGCGCCAAAGc -3'
miRNA:   3'- -CUGUGUACGCGCGUCGACGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 47868 0.74 0.435737
Target:  5'- uGCGCGggcGCGCGCAGCgcgcgcgcgcccgcGCGCCGGGGc -3'
miRNA:   3'- cUGUGUa--CGCGCGUCGa-------------CGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 33151 0.74 0.460148
Target:  5'- cGugGCGaGCGCgGCGGUUGCGCCGc-- -3'
miRNA:   3'- -CugUGUaCGCG-CGUCGACGCGGUuuc -5'
6562 5' -55.5 NC_001847.1 + 105140 0.65 0.890358
Target:  5'- cACGCggGCGgGCAGCggcggcucccgccGCGCCGGc- -3'
miRNA:   3'- cUGUGuaCGCgCGUCGa------------CGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 11322 0.79 0.218546
Target:  5'- cGAgGCcgGCGgGCGGCUgGCGCCGGAGc -3'
miRNA:   3'- -CUgUGuaCGCgCGUCGA-CGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 117420 0.78 0.247651
Target:  5'- gGACGCuu-CGCGCGGCUGCGCCcuGGc -3'
miRNA:   3'- -CUGUGuacGCGCGUCGACGCGGuuUC- -5'
6562 5' -55.5 NC_001847.1 + 94048 0.77 0.293692
Target:  5'- -cCACGUGCagGCGCAGCUGgGCCGGc- -3'
miRNA:   3'- cuGUGUACG--CGCGUCGACgCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 34633 0.77 0.300789
Target:  5'- cGGCGCcUGCGCGCcgaggccgAGCggcGCGCCGAGGg -3'
miRNA:   3'- -CUGUGuACGCGCG--------UCGa--CGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 101359 0.76 0.346143
Target:  5'- gGGCuGCAUGCGCGCGcUUGCGCCGcGGg -3'
miRNA:   3'- -CUG-UGUACGCGCGUcGACGCGGUuUC- -5'
6562 5' -55.5 NC_001847.1 + 21004 0.75 0.404976
Target:  5'- cGGCACc-GCGCGCGGCUGUGCgGGc- -3'
miRNA:   3'- -CUGUGuaCGCGCGUCGACGCGgUUuc -5'
6562 5' -55.5 NC_001847.1 + 112873 0.76 0.362312
Target:  5'- cGACAC--GCGCGC-GCUGCGCCGc-- -3'
miRNA:   3'- -CUGUGuaCGCGCGuCGACGCGGUuuc -5'
6562 5' -55.5 NC_001847.1 + 88869 0.76 0.337473
Target:  5'- aGACGCgGUGCGCGCGGCgGCggcggcggcucccGCCGGGGg -3'
miRNA:   3'- -CUGUG-UACGCGCGUCGaCG-------------CGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 30195 0.81 0.160454
Target:  5'- cGACGCG-GUGCGCGGCgcgcGCGCCGAAGc -3'
miRNA:   3'- -CUGUGUaCGCGCGUCGa---CGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 34601 0.75 0.404976
Target:  5'- gGGCGC-UG-GCGCGGCggcGCGCCGAGGa -3'
miRNA:   3'- -CUGUGuACgCGCGUCGa--CGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 63865 0.8 0.187528
Target:  5'- gGGCGCAUGCGCGaCGGCUgggacGCGCUGGAGu -3'
miRNA:   3'- -CUGUGUACGCGC-GUCGA-----CGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 97445 0.76 0.322872
Target:  5'- uGCGCAgccgcGCGcCGCAGCcGCGCCAGGGc -3'
miRNA:   3'- cUGUGUa----CGC-GCGUCGaCGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 4226 0.75 0.404976
Target:  5'- uGCGCGgugccgGCGCGCgccggcacgAGCUGCGCCAGc- -3'
miRNA:   3'- cUGUGUa-----CGCGCG---------UCGACGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 37709 0.74 0.440374
Target:  5'- -uCACGUGCGCGCuGCUgcugggcGCGCCGGu- -3'
miRNA:   3'- cuGUGUACGCGCGuCGA-------CGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 52630 0.8 0.197412
Target:  5'- cGGCGCGUGCGCG-AGCgccGCGCCAGAc -3'
miRNA:   3'- -CUGUGUACGCGCgUCGa--CGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 34262 0.78 0.26661
Target:  5'- aGGCGCAgaccgGCGCGCGGCggcuggGCGCCGc-- -3'
miRNA:   3'- -CUGUGUa----CGCGCGUCGa-----CGCGGUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.