miRNA display CGI


Results 1 - 20 of 491 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6562 5' -55.5 NC_001847.1 + 615 0.72 0.570301
Target:  5'- -cCGCAgcgGCGCGCGGCccGCGCCu--- -3'
miRNA:   3'- cuGUGUa--CGCGCGUCGa-CGCGGuuuc -5'
6562 5' -55.5 NC_001847.1 + 874 0.68 0.79522
Target:  5'- cACGCGcgGCG-GCGGCccGCGCCGGGGc -3'
miRNA:   3'- cUGUGUa-CGCgCGUCGa-CGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 947 0.69 0.746981
Target:  5'- --gGCccGCGCGCGccgcuccacGCUGCGCCGGGc -3'
miRNA:   3'- cugUGuaCGCGCGU---------CGACGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 1143 0.7 0.661626
Target:  5'- cGGCGCcucgGCGCGCGGCUccggcagcgcggccGCGCaGAAGg -3'
miRNA:   3'- -CUGUGua--CGCGCGUCGA--------------CGCGgUUUC- -5'
6562 5' -55.5 NC_001847.1 + 1249 0.72 0.549619
Target:  5'- uACACcgGC-CGCAGCggcGCGCCGAGc -3'
miRNA:   3'- cUGUGuaCGcGCGUCGa--CGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 1576 0.68 0.756882
Target:  5'- aGCACGgcGCGCGcCAGC-GCGCCGc-- -3'
miRNA:   3'- cUGUGUa-CGCGC-GUCGaCGCGGUuuc -5'
6562 5' -55.5 NC_001847.1 + 1603 0.7 0.675249
Target:  5'- gGGC-CA-GCGCGCGGCgcacUGCGCCGcGGc -3'
miRNA:   3'- -CUGuGUaCGCGCGUCG----ACGCGGUuUC- -5'
6562 5' -55.5 NC_001847.1 + 1869 0.69 0.706411
Target:  5'- aGCGCAc-CGCGCGGCUuagacGCGCCAAc- -3'
miRNA:   3'- cUGUGUacGCGCGUCGA-----CGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 1909 0.66 0.87895
Target:  5'- aGCGCGUGCGagagcccgcCGCGGCgcgGCgGCCAc-- -3'
miRNA:   3'- cUGUGUACGC---------GCGUCGa--CG-CGGUuuc -5'
6562 5' -55.5 NC_001847.1 + 2327 0.65 0.890358
Target:  5'- cACGCggGCGgGCAGCggcggcucccgccGCGCCGGc- -3'
miRNA:   3'- cUGUGuaCGCgCGUCGa------------CGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 2751 0.69 0.736974
Target:  5'- cGGC-CcgGCGCgGCGGCgccgGCGCCGGc- -3'
miRNA:   3'- -CUGuGuaCGCG-CGUCGa---CGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 2955 0.69 0.704349
Target:  5'- aGCGCGgcggccgccucgGCGCGCAGC-GCcGCCGGGGc -3'
miRNA:   3'- cUGUGUa-----------CGCGCGUCGaCG-CGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 2999 0.67 0.83957
Target:  5'- -cCACccUGCGCgGCAGCaGCGCCGc-- -3'
miRNA:   3'- cuGUGu-ACGCG-CGUCGaCGCGGUuuc -5'
6562 5' -55.5 NC_001847.1 + 3150 0.67 0.804438
Target:  5'- cGGCGCcgGCgGCGCGGCggGcCGCCu--- -3'
miRNA:   3'- -CUGUGuaCG-CGCGUCGa-C-GCGGuuuc -5'
6562 5' -55.5 NC_001847.1 + 3290 0.68 0.756882
Target:  5'- aGCACG-GCGCGCAGCU-CGgCGAGc -3'
miRNA:   3'- cUGUGUaCGCGCGUCGAcGCgGUUUc -5'
6562 5' -55.5 NC_001847.1 + 3315 0.66 0.863854
Target:  5'- cGGCGCggGCGcCGCuGCcgccgGCGCCGGc- -3'
miRNA:   3'- -CUGUGuaCGC-GCGuCGa----CGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 3465 0.7 0.675249
Target:  5'- cGACAgCAaGCGCGCgccGGC-GCGCCGAGa -3'
miRNA:   3'- -CUGU-GUaCGCGCG---UCGaCGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 3918 0.68 0.766667
Target:  5'- gGGCGCcgguUGCGCGCccgcGCUGgCGCCGcGGc -3'
miRNA:   3'- -CUGUGu---ACGCGCGu---CGAC-GCGGUuUC- -5'
6562 5' -55.5 NC_001847.1 + 3988 0.69 0.736974
Target:  5'- gGGC-CggGCGCGCGGCcccgcgggGCGCCGGGc -3'
miRNA:   3'- -CUGuGuaCGCGCGUCGa-------CGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 4226 0.75 0.404976
Target:  5'- uGCGCGgugccgGCGCGCgccggcacgAGCUGCGCCAGc- -3'
miRNA:   3'- cUGUGUa-----CGCGCG---------UCGACGCGGUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.