miRNA display CGI


Results 1 - 20 of 876 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6571 5' -63.3 NC_001847.1 + 61896 0.66 0.626421
Target:  5'- gCGCaCGGccucGAgcGCGCCcGCgCCGcCGCCCc -3'
miRNA:   3'- gGCG-GCC----CU--UGCGGuCG-GGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 15241 0.66 0.625455
Target:  5'- gCGCCGGcGGcgGCGgCGGCCaCGcacgcgaUCGCCg -3'
miRNA:   3'- gGCGGCC-CU--UGCgGUCGG-GC-------AGCGGg -5'
6571 5' -63.3 NC_001847.1 + 100373 0.66 0.617732
Target:  5'- gCGCCGcGGccgcggcgcgcagccGCGCCAGCUCGgccgCGUCg -3'
miRNA:   3'- gGCGGC-CCu--------------UGCGGUCGGGCa---GCGGg -5'
6571 5' -63.3 NC_001847.1 + 123295 0.66 0.616766
Target:  5'- gCCGCCcgcaGGGcGGCGCCagaGGCCUuaCGCCa -3'
miRNA:   3'- -GGCGG----CCC-UUGCGG---UCGGGcaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 106948 0.66 0.616766
Target:  5'- gCCGCCGuGGcGCGCaGGCgCG-CGgCCg -3'
miRNA:   3'- -GGCGGC-CCuUGCGgUCGgGCaGCgGG- -5'
6571 5' -63.3 NC_001847.1 + 67003 0.66 0.616766
Target:  5'- gCGCCGGaGAaggggcagacgcGCGCUcGCCCG-CGaCCa -3'
miRNA:   3'- gGCGGCC-CU------------UGCGGuCGGGCaGCgGG- -5'
6571 5' -63.3 NC_001847.1 + 3331 0.66 0.616766
Target:  5'- gCCGCCGG---CGCCGGCCUccggGUagGCCa -3'
miRNA:   3'- -GGCGGCCcuuGCGGUCGGG----CAg-CGGg -5'
6571 5' -63.3 NC_001847.1 + 114158 0.66 0.616766
Target:  5'- gUGCCGauuGGGAgGCCuAGUgCGcgCGCCCg -3'
miRNA:   3'- gGCGGC---CCUUgCGG-UCGgGCa-GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 22586 0.66 0.616766
Target:  5'- gCC-CCGGGGcaGgGCCcGCCCgGUCGCg- -3'
miRNA:   3'- -GGcGGCCCU--UgCGGuCGGG-CAGCGgg -5'
6571 5' -63.3 NC_001847.1 + 3808 0.66 0.626421
Target:  5'- gCgGCCGGGcGGCGgCGGCgCGcUGCCg -3'
miRNA:   3'- -GgCGGCCC-UUGCgGUCGgGCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 60412 0.66 0.626421
Target:  5'- -aGCCGGGu-CGCCgAGCuaauccaggCCGccagCGCCCc -3'
miRNA:   3'- ggCGGCCCuuGCGG-UCG---------GGCa---GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 96692 0.66 0.626421
Target:  5'- gCCGgCGGGuacgcguCGCCAauCUCGUCGUCUa -3'
miRNA:   3'- -GGCgGCCCuu-----GCGGUc-GGGCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 104139 0.66 0.626421
Target:  5'- gCGCCGGcAACGCCGGacauggugCCGcuUCGCUg -3'
miRNA:   3'- gGCGGCCcUUGCGGUCg-------GGC--AGCGGg -5'
6571 5' -63.3 NC_001847.1 + 82140 0.66 0.626421
Target:  5'- gCCGCCGcugucGGcucCGCCAuGCCUGcgCGUCCc -3'
miRNA:   3'- -GGCGGC-----CCuu-GCGGU-CGGGCa-GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 123631 0.66 0.626421
Target:  5'- uCgGCCGGGGcgGCGCCcuuGGCUgaaGgCGCCUg -3'
miRNA:   3'- -GgCGGCCCU--UGCGG---UCGGg--CaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 87448 0.66 0.626421
Target:  5'- cCCGgCGGccgccAACGCCgaGGaCCuCGUCGUCCa -3'
miRNA:   3'- -GGCgGCCc----UUGCGG--UC-GG-GCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 76072 0.66 0.626421
Target:  5'- -gGCgaGGGcGCGCCAGCCgagcUGcCGCCUc -3'
miRNA:   3'- ggCGg-CCCuUGCGGUCGG----GCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 34152 0.66 0.626421
Target:  5'- gCCGCCGcGGcGGCaCCu-UCCGUCGCUCg -3'
miRNA:   3'- -GGCGGC-CC-UUGcGGucGGGCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 33993 0.66 0.626421
Target:  5'- gCC-CCGGccccGGCcCCAGCCCccgCGCCCa -3'
miRNA:   3'- -GGcGGCCc---UUGcGGUCGGGca-GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 13066 0.66 0.626421
Target:  5'- gUCGCCGGcguCGCCgaugAGCCgGUCGUa- -3'
miRNA:   3'- -GGCGGCCcuuGCGG----UCGGgCAGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.