miRNA display CGI


Results 1 - 20 of 876 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6571 5' -63.3 NC_001847.1 + 47712 1.12 0.000404
Target:  5'- gCCGCCGGGAACGCCAGCCCGUCGCCCg -3'
miRNA:   3'- -GGCGGCCCUUGCGGUCGGGCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 42004 0.86 0.034389
Target:  5'- cCCGCgGGGGGCGCCggcAGCCCGgccagcuUCGCCCg -3'
miRNA:   3'- -GGCGgCCCUUGCGG---UCGGGC-------AGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 775 0.85 0.036302
Target:  5'- gCCGCCGGcGGCGCCGGCCucguCGUCGUCCg -3'
miRNA:   3'- -GGCGGCCcUUGCGGUCGG----GCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 103588 0.85 0.036302
Target:  5'- gCCGCCGGcGGCGCCGGCCucguCGUCGUCCg -3'
miRNA:   3'- -GGCGGCCcUUGCGGUCGG----GCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 113410 0.85 0.03725
Target:  5'- gCGCgCGGGccGGCGCCGGCCCG-CGCCCu -3'
miRNA:   3'- gGCG-GCCC--UUGCGGUCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 10597 0.85 0.03725
Target:  5'- gCGCgCGGGccGGCGCCGGCCCG-CGCCCu -3'
miRNA:   3'- gGCG-GCCC--UUGCGGUCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 930 0.84 0.046943
Target:  5'- gCGCCGGGAA-GCCcgAGCCCG-CGCCCg -3'
miRNA:   3'- gGCGGCCCUUgCGG--UCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 103743 0.84 0.046943
Target:  5'- gCGCCGGGAA-GCCcgAGCCCG-CGCCCg -3'
miRNA:   3'- gGCGGCCCUUgCGG--UCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 48151 0.84 0.048161
Target:  5'- aCCGCCGGGccggcgcGCGCCGGCCCGgccggcggCGUCCu -3'
miRNA:   3'- -GGCGGCCCu------UGCGGUCGGGCa-------GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 79604 0.83 0.054729
Target:  5'- gCGCCGGGGGCGUUgucGCCgGUCGCCCc -3'
miRNA:   3'- gGCGGCCCUUGCGGu--CGGgCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 38793 0.83 0.054729
Target:  5'- cCUGCCGGcAgcgcgucgcACGCCAGCCCGcCGCCCa -3'
miRNA:   3'- -GGCGGCCcU---------UGCGGUCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 29564 0.83 0.054729
Target:  5'- gCCGgCGGGGGCGCCGGCgCCGgCGCCg -3'
miRNA:   3'- -GGCgGCCCUUGCGGUCG-GGCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 132377 0.83 0.054729
Target:  5'- gCCGgCGGGGGCGCCGGCgCCGgCGCCg -3'
miRNA:   3'- -GGCgGCCCUUGCGGUCG-GGCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 65448 0.82 0.065403
Target:  5'- gCGCCGcGGAccgaGCGCCGGcCCCG-CGCCCa -3'
miRNA:   3'- gGCGGC-CCU----UGCGGUC-GGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 83018 0.81 0.074229
Target:  5'- uCCGCUGGGGcgcCGCCGGCCCG-CGgCCg -3'
miRNA:   3'- -GGCGGCCCUu--GCGGUCGGGCaGCgGG- -5'
6571 5' -63.3 NC_001847.1 + 123353 0.81 0.076127
Target:  5'- gCGCCGGGucgaaAGCGCCAcuGCCCGccCGCCCu -3'
miRNA:   3'- gGCGGCCC-----UUGCGGU--CGGGCa-GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 9630 0.81 0.078071
Target:  5'- cCCGCCGcc-GCGCCGGCCCGcCGCUCg -3'
miRNA:   3'- -GGCGGCccuUGCGGUCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 106815 0.8 0.086332
Target:  5'- gCC-CCGcGGGGCGCCgGGCCCGgCGCCCg -3'
miRNA:   3'- -GGcGGC-CCUUGCGG-UCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 4002 0.8 0.086332
Target:  5'- gCC-CCGcGGGGCGCCgGGCCCGgCGCCCg -3'
miRNA:   3'- -GGcGGC-CCUUGCGG-UCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 122826 0.8 0.088524
Target:  5'- gCCGgCGGGcGCGCCcaccgGGCCCG-CGCCCu -3'
miRNA:   3'- -GGCgGCCCuUGCGG-----UCGGGCaGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.