miRNA display CGI


Results 1 - 20 of 876 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6571 5' -63.3 NC_001847.1 + 47712 1.12 0.000404
Target:  5'- gCCGCCGGGAACGCCAGCCCGUCGCCCg -3'
miRNA:   3'- -GGCGGCCCUUGCGGUCGGGCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 31033 0.77 0.128402
Target:  5'- gCGCCGGcAACGCCGGCCgaCGUCGCg- -3'
miRNA:   3'- gGCGGCCcUUGCGGUCGG--GCAGCGgg -5'
6571 5' -63.3 NC_001847.1 + 81820 0.77 0.131583
Target:  5'- gCGgCGGGGcGCGCC-GUCUGUCGCCCg -3'
miRNA:   3'- gGCgGCCCU-UGCGGuCGGGCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 61896 0.66 0.626421
Target:  5'- gCGCaCGGccucGAgcGCGCCcGCgCCGcCGCCCc -3'
miRNA:   3'- gGCG-GCC----CU--UGCGGuCG-GGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 48151 0.84 0.048161
Target:  5'- aCCGCCGGGccggcgcGCGCCGGCCCGgccggcggCGUCCu -3'
miRNA:   3'- -GGCGGCCCu------UGCGGUCGGGCa-------GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 132377 0.83 0.054729
Target:  5'- gCCGgCGGGGGCGCCGGCgCCGgCGCCg -3'
miRNA:   3'- -GGCgGCCCUUGCGGUCG-GGCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 83018 0.81 0.074229
Target:  5'- uCCGCUGGGGcgcCGCCGGCCCG-CGgCCg -3'
miRNA:   3'- -GGCGGCCCUu--GCGGUCGGGCaGCgGG- -5'
6571 5' -63.3 NC_001847.1 + 9630 0.81 0.078071
Target:  5'- cCCGCCGcc-GCGCCGGCCCGcCGCUCg -3'
miRNA:   3'- -GGCGGCccuUGCGGUCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 42992 0.8 0.088524
Target:  5'- aCGCCGGGAACGCC-GCCgGgggggCGCgCCg -3'
miRNA:   3'- gGCGGCCCUUGCGGuCGGgCa----GCG-GG- -5'
6571 5' -63.3 NC_001847.1 + 130090 0.78 0.110768
Target:  5'- cCCGCCGuccgucccgucGGAGcCGCC-GCCgGUCGCCCg -3'
miRNA:   3'- -GGCGGC-----------CCUU-GCGGuCGGgCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 82098 0.79 0.105412
Target:  5'- gUCGCCGGaGGGCGCCugcguuugcGCCUGcCGCCCg -3'
miRNA:   3'- -GGCGGCC-CUUGCGGu--------CGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 122826 0.8 0.088524
Target:  5'- gCCGgCGGGcGCGCCcaccgGGCCCG-CGCCCu -3'
miRNA:   3'- -GGCgGCCCuUGCGG-----UCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 103588 0.85 0.036302
Target:  5'- gCCGCCGGcGGCGCCGGCCucguCGUCGUCCg -3'
miRNA:   3'- -GGCGGCCcUUGCGGUCGG----GCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 971 0.79 0.105412
Target:  5'- gCGCCGGGcgucuauGCGCCGGCCCGcagcaccuUCuGCCCc -3'
miRNA:   3'- gGCGGCCCu------UGCGGUCGGGC--------AG-CGGG- -5'
6571 5' -63.3 NC_001847.1 + 113410 0.85 0.03725
Target:  5'- gCGCgCGGGccGGCGCCGGCCCG-CGCCCu -3'
miRNA:   3'- gGCG-GCCC--UUGCGGUCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 106815 0.8 0.086332
Target:  5'- gCC-CCGcGGGGCGCCgGGCCCGgCGCCCg -3'
miRNA:   3'- -GGcGGC-CCUUGCGG-UCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 113461 0.78 0.110768
Target:  5'- cUCGCCGGGcuccuCGCCAuaCCCGUCGCCg -3'
miRNA:   3'- -GGCGGCCCuu---GCGGUc-GGGCAGCGGg -5'
6571 5' -63.3 NC_001847.1 + 77475 0.77 0.128402
Target:  5'- gCGCCGGGcGC-CCGGCCCGgccCGCCg -3'
miRNA:   3'- gGCGGCCCuUGcGGUCGGGCa--GCGGg -5'
6571 5' -63.3 NC_001847.1 + 103743 0.84 0.046943
Target:  5'- gCGCCGGGAA-GCCcgAGCCCG-CGCCCg -3'
miRNA:   3'- gGCGGCCCUUgCGG--UCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 65448 0.82 0.065403
Target:  5'- gCGCCGcGGAccgaGCGCCGGcCCCG-CGCCCa -3'
miRNA:   3'- gGCGGC-CCU----UGCGGUC-GGGCaGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.