miRNA display CGI


Results 1 - 20 of 876 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6571 5' -63.3 NC_001847.1 + 100 0.68 0.476327
Target:  5'- uCCGCCccuGGGuccgGCGCCccgcgccccGGCCC--CGCCCg -3'
miRNA:   3'- -GGCGG---CCCu---UGCGG---------UCGGGcaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 164 0.66 0.578313
Target:  5'- -gGCCGGGGuucuGCGUCuuggcccccggGGCCCc-CGCCCc -3'
miRNA:   3'- ggCGGCCCU----UGCGG-----------UCGGGcaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 218 0.74 0.212209
Target:  5'- gCGcCCGGGGGC-CCgAGCCCGggccucgCGCCCc -3'
miRNA:   3'- gGC-GGCCCUUGcGG-UCGGGCa------GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 271 0.72 0.285059
Target:  5'- cCCGagcCCGGGGGcCGCCgAGCCCGcgcgggCGCCg -3'
miRNA:   3'- -GGC---GGCCCUU-GCGG-UCGGGCa-----GCGGg -5'
6571 5' -63.3 NC_001847.1 + 317 0.69 0.42455
Target:  5'- cCCGCCGGaGcuucGCGCUccacGCCCG-CGUCCc -3'
miRNA:   3'- -GGCGGCC-Cu---UGCGGu---CGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 545 0.71 0.311137
Target:  5'- aCGCgGGGAacguggcggcggACGCCAGCgCCG-CGUCUc -3'
miRNA:   3'- gGCGgCCCU------------UGCGGUCG-GGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 586 0.69 0.452623
Target:  5'- gCGCCGGGuccuggcccuccgcgGccgcuccgcagcgGCGCgCGGCCCG-CGCCUc -3'
miRNA:   3'- gGCGGCCC---------------U-------------UGCG-GUCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 775 0.85 0.036302
Target:  5'- gCCGCCGGcGGCGCCGGCCucguCGUCGUCCg -3'
miRNA:   3'- -GGCGGCCcUUGCGGUCGG----GCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 900 0.75 0.175793
Target:  5'- gCCGCCGcGGc-CGCCGG-CCGcCGCCCg -3'
miRNA:   3'- -GGCGGC-CCuuGCGGUCgGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 930 0.84 0.046943
Target:  5'- gCGCCGGGAA-GCCcgAGCCCG-CGCCCg -3'
miRNA:   3'- gGCGGCCCUUgCGG--UCGGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 971 0.79 0.105412
Target:  5'- gCGCCGGGcgucuauGCGCCGGCCCGcagcaccuUCuGCCCc -3'
miRNA:   3'- gGCGGCCCu------UGCGGUCGGGC--------AG-CGGG- -5'
6571 5' -63.3 NC_001847.1 + 992 0.71 0.338989
Target:  5'- uCCGCCGcGGcGGCGgcacgcgcuccaCCAGgCCGcCGCCCg -3'
miRNA:   3'- -GGCGGC-CC-UUGC------------GGUCgGGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 1090 0.69 0.432948
Target:  5'- aCGCCGGG--CGCCgcGGCCgCGggcggCGCCg -3'
miRNA:   3'- gGCGGCCCuuGCGG--UCGG-GCa----GCGGg -5'
6571 5' -63.3 NC_001847.1 + 1189 0.73 0.231148
Target:  5'- aCCGCCGcGGccggcagcucgucgGGCGCCAGCUccagcgcgCGcCGCCCg -3'
miRNA:   3'- -GGCGGC-CC--------------UUGCGGUCGG--------GCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 1544 0.66 0.587889
Target:  5'- gCCGCCcaagccCGCCcGCCCGauagcgCGCCCg -3'
miRNA:   3'- -GGCGGcccuu-GCGGuCGGGCa-----GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 1563 0.69 0.40561
Target:  5'- gCGCCGcGAggccagcacggcgcGCGCCAGCgCGcCGCUCg -3'
miRNA:   3'- gGCGGCcCU--------------UGCGGUCGgGCaGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 1768 0.7 0.353579
Target:  5'- gCGCCGcGGAAgGCCAGguCCCG-CGUCg -3'
miRNA:   3'- gGCGGC-CCUUgCGGUC--GGGCaGCGGg -5'
6571 5' -63.3 NC_001847.1 + 1784 0.71 0.311137
Target:  5'- cCCGCCacgcaggucccGGGGAUGUacuccucgaaaGGCgCGUCGCCCa -3'
miRNA:   3'- -GGCGG-----------CCCUUGCGg----------UCGgGCAGCGGG- -5'
6571 5' -63.3 NC_001847.1 + 1816 0.68 0.476327
Target:  5'- gCGCCGaGcGCGCuCAcGUCCGgcgCGCCCg -3'
miRNA:   3'- gGCGGCcCuUGCG-GU-CGGGCa--GCGGG- -5'
6571 5' -63.3 NC_001847.1 + 1923 0.66 0.568771
Target:  5'- cCCGCCGcGGcGCGgCGGCCacuCGggcCGCCg -3'
miRNA:   3'- -GGCGGC-CCuUGCgGUCGG---GCa--GCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.