miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6574 5' -53.1 NC_001847.1 + 70742 0.66 0.968763
Target:  5'- cGCGCGuaaagGCgGACcUGGugGCcGUUGggGa -3'
miRNA:   3'- -CGCGU-----UG-CUGuACCugCG-CGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 99315 0.66 0.962127
Target:  5'- cGCGCAGCG-CGUcGAUGCGCUc---- -3'
miRNA:   3'- -CGCGUUGCuGUAcCUGCGCGAcuuca -5'
6574 5' -53.1 NC_001847.1 + 48175 0.66 0.961053
Target:  5'- aGCaGCAugGGCGUgaacacgggcucgGGGCGCGCggcgcugcugucGAAGUa -3'
miRNA:   3'- -CG-CGUugCUGUA-------------CCUGCGCGa-----------CUUCA- -5'
6574 5' -53.1 NC_001847.1 + 87584 0.66 0.959958
Target:  5'- uGCGCGGCcGCcgGGcuccccgcgcccgcCGUGCUGGAGUu -3'
miRNA:   3'- -CGCGUUGcUGuaCCu-------------GCGCGACUUCA- -5'
6574 5' -53.1 NC_001847.1 + 46022 0.66 0.958466
Target:  5'- cGCGCGcACGACcaccgGGGCGgCGCUGc--- -3'
miRNA:   3'- -CGCGU-UGCUGua---CCUGC-GCGACuuca -5'
6574 5' -53.1 NC_001847.1 + 1409 0.66 0.958466
Target:  5'- cGCGCGGCGGCAcGGGCaccgcgguGCGCgGGcccAGg -3'
miRNA:   3'- -CGCGUUGCUGUaCCUG--------CGCGaCU---UCa -5'
6574 5' -53.1 NC_001847.1 + 46533 0.66 0.958466
Target:  5'- gGgGCGGCGGCGgc-GCGCGC-GAGGUc -3'
miRNA:   3'- -CgCGUUGCUGUaccUGCGCGaCUUCA- -5'
6574 5' -53.1 NC_001847.1 + 15328 0.66 0.958466
Target:  5'- gGCGUAGCGg---GGGCGgGCggGggGUg -3'
miRNA:   3'- -CGCGUUGCuguaCCUGCgCGa-CuuCA- -5'
6574 5' -53.1 NC_001847.1 + 47965 0.66 0.958466
Target:  5'- -aGCAGCG-CGUGGAgGaUGUUGAGGc -3'
miRNA:   3'- cgCGUUGCuGUACCUgC-GCGACUUCa -5'
6574 5' -53.1 NC_001847.1 + 72965 0.66 0.962127
Target:  5'- cGCGCGGauugggGACGcGGACGCGCccgcgcgGGAGc -3'
miRNA:   3'- -CGCGUUg-----CUGUaCCUGCGCGa------CUUCa -5'
6574 5' -53.1 NC_001847.1 + 49756 0.66 0.965224
Target:  5'- uUGCGGCGGCGuaucauaUGaACGCGCUGgcGa -3'
miRNA:   3'- cGCGUUGCUGU-------ACcUGCGCGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 109260 0.66 0.965557
Target:  5'- aGCGgGuCGGCAgGGGCGgGCUGcAAGc -3'
miRNA:   3'- -CGCgUuGCUGUaCCUGCgCGAC-UUCa -5'
6574 5' -53.1 NC_001847.1 + 11894 0.66 0.968763
Target:  5'- cUGguGCGGCcgGGGucCGCGCUGgcGc -3'
miRNA:   3'- cGCguUGCUGuaCCU--GCGCGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 87295 0.66 0.967824
Target:  5'- cGCGCAgcacgcgaccuccuGCGACGUGGAagucaacugcacCGCGgacaacCUGGAGc -3'
miRNA:   3'- -CGCGU--------------UGCUGUACCU------------GCGC------GACUUCa -5'
6574 5' -53.1 NC_001847.1 + 73765 0.66 0.966866
Target:  5'- cGgGCGGCGGCGcGGGCcgcuacgagcgcgggGCGCUGGAn- -3'
miRNA:   3'- -CgCGUUGCUGUaCCUG---------------CGCGACUUca -5'
6574 5' -53.1 NC_001847.1 + 128102 0.66 0.965557
Target:  5'- gGCGaaagcccaAACGACGUGGcGCugGCGCUGgcGg -3'
miRNA:   3'- -CGCg-------UUGCUGUACC-UG--CGCGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 92988 0.66 0.965557
Target:  5'- cGUGCAGCcACAcGcGA-GCGCUGGAGg -3'
miRNA:   3'- -CGCGUUGcUGUaC-CUgCGCGACUUCa -5'
6574 5' -53.1 NC_001847.1 + 49585 0.66 0.965557
Target:  5'- cCGaCGGCGGCGccUGGGCGCaGCgGGAGc -3'
miRNA:   3'- cGC-GUUGCUGU--ACCUGCG-CGaCUUCa -5'
6574 5' -53.1 NC_001847.1 + 33314 0.66 0.965557
Target:  5'- uGCGCAGCcuguuguuCGUGGcgGCGCGCUGc-GUg -3'
miRNA:   3'- -CGCGUUGcu------GUACC--UGCGCGACuuCA- -5'
6574 5' -53.1 NC_001847.1 + 28454 0.66 0.965557
Target:  5'- gGCGCcgcGCGACG-GGcCGCcgccGCUGGAGg -3'
miRNA:   3'- -CGCGu--UGCUGUaCCuGCG----CGACUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.