Results 1 - 20 of 254 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6574 | 5' | -53.1 | NC_001847.1 | + | 50627 | 1.1 | 0.004061 |
Target: 5'- gGCGCAACGACAUGGACGCGCUGAAGUa -3' miRNA: 3'- -CGCGUUGCUGUACCUGCGCGACUUCA- -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 32632 | 0.74 | 0.637139 |
Target: 5'- uGCaCGACGcCGUGGACGaGCUGGAGg -3' miRNA: 3'- -CGcGUUGCuGUACCUGCgCGACUUCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 41167 | 0.73 | 0.679078 |
Target: 5'- aGCGC-GCGGCGcGGGCGCGCguguuaaGAGGg -3' miRNA: 3'- -CGCGuUGCUGUaCCUGCGCGa------CUUCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 70742 | 0.66 | 0.968763 |
Target: 5'- cGCGCGuaaagGCgGACcUGGugGCcGUUGggGa -3' miRNA: 3'- -CGCGU-----UG-CUGuACCugCG-CGACuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 133792 | 0.77 | 0.445035 |
Target: 5'- gGCGCAAgGACAUGGccgcgcagggcGCgGCGCUGggGc -3' miRNA: 3'- -CGCGUUgCUGUACC-----------UG-CGCGACuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 50812 | 0.77 | 0.454433 |
Target: 5'- aGCGCGuacaGCGAC-UGcGACGUGCUGggGa -3' miRNA: 3'- -CGCGU----UGCUGuAC-CUGCGCGACuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 54355 | 0.77 | 0.473544 |
Target: 5'- aGCGCAACGA---GGACGCGCUGcgcGAGc -3' miRNA: 3'- -CGCGUUGCUguaCCUGCGCGAC---UUCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 107821 | 0.76 | 0.522974 |
Target: 5'- aGCGCGGCGGCGgcGGCGCGgaGggGa -3' miRNA: 3'- -CGCGUUGCUGUacCUGCGCgaCuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 29672 | 0.75 | 0.553571 |
Target: 5'- aGCGCaAACGGCGUGG-CGCaGCUGAu-- -3' miRNA: 3'- -CGCG-UUGCUGUACCuGCG-CGACUuca -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 80979 | 0.74 | 0.605608 |
Target: 5'- cGCGCGuuugACGACGcggaGGACGCGCUGcuGg -3' miRNA: 3'- -CGCGU----UGCUGUa---CCUGCGCGACuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 33706 | 0.75 | 0.584678 |
Target: 5'- gGCGCGGCGGCgcGUGGcCGaGCUGggGg -3' miRNA: 3'- -CGCGUUGCUG--UACCuGCgCGACuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 86517 | 0.75 | 0.543306 |
Target: 5'- cGCGCGGCGGC-UGGGCGCccgcguGCUGgcGg -3' miRNA: 3'- -CGCGUUGCUGuACCUGCG------CGACuuCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 63872 | 0.94 | 0.04777 |
Target: 5'- uGCGCGACGGCugGGACGCGCUGGAGUg -3' miRNA: 3'- -CGCGUUGCUGuaCCUGCGCGACUUCA- -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 54546 | 0.74 | 0.595128 |
Target: 5'- gGCGCAGaCGGCggGGGCGgCGCgGAGGa -3' miRNA: 3'- -CGCGUU-GCUGuaCCUGC-GCGaCUUCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 50252 | 0.78 | 0.391054 |
Target: 5'- aCGCGGCGAagcUGGACGCGCUGGGc- -3' miRNA: 3'- cGCGUUGCUgu-ACCUGCGCGACUUca -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 33803 | 0.76 | 0.533105 |
Target: 5'- cGCGCGGCG-CccGG-CGCGCUGGAGc -3' miRNA: 3'- -CGCGUUGCuGuaCCuGCGCGACUUCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 72315 | 0.74 | 0.605608 |
Target: 5'- cGCGCguggcgGugGACGcGGACGCGCUGcuGGUg -3' miRNA: 3'- -CGCG------UugCUGUaCCUGCGCGACu-UCA- -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 33967 | 0.73 | 0.668632 |
Target: 5'- aGCGCGcUGGCGccGGGCGCGCUGGccGGg -3' miRNA: 3'- -CGCGUuGCUGUa-CCUGCGCGACU--UCa -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 118987 | 0.77 | 0.435748 |
Target: 5'- aGCGCGGCGGCGUGcGACaugcugGCGCUGAu-- -3' miRNA: 3'- -CGCGUUGCUGUAC-CUG------CGCGACUuca -5' |
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6574 | 5' | -53.1 | NC_001847.1 | + | 34677 | 0.77 | 0.463937 |
Target: 5'- cGCGCAGCGGCA-GGAggaGCGCUGgcGc -3' miRNA: 3'- -CGCGUUGCUGUaCCUg--CGCGACuuCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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