miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6574 5' -53.1 NC_001847.1 + 56 0.69 0.888497
Target:  5'- cGUGCAuuGCGGCGggcggGGGCGgGgUGggGg -3'
miRNA:   3'- -CGCGU--UGCUGUa----CCUGCgCgACuuCa -5'
6574 5' -53.1 NC_001847.1 + 876 0.68 0.914522
Target:  5'- cGCGCGGCGGCGgcc-CGCGCcGggGc -3'
miRNA:   3'- -CGCGUUGCUGUaccuGCGCGaCuuCa -5'
6574 5' -53.1 NC_001847.1 + 1154 0.68 0.920407
Target:  5'- cGCGCGGCuccGGCAgcgcGGcCGCGCaGAAGg -3'
miRNA:   3'- -CGCGUUG---CUGUa---CCuGCGCGaCUUCa -5'
6574 5' -53.1 NC_001847.1 + 1409 0.66 0.958466
Target:  5'- cGCGCGGCGGCAcGGGCaccgcgguGCGCgGGcccAGg -3'
miRNA:   3'- -CGCGUUGCUGUaCCUG--------CGCGaCU---UCa -5'
6574 5' -53.1 NC_001847.1 + 1516 0.67 0.941426
Target:  5'- cGCGCGuagGCGGCcucGGCGCGCgcGAAGg -3'
miRNA:   3'- -CGCGU---UGCUGuacCUGCGCGa-CUUCa -5'
6574 5' -53.1 NC_001847.1 + 1732 0.67 0.950433
Target:  5'- cGCGCcGCGGCcagccGCGCGCaGAGGUa -3'
miRNA:   3'- -CGCGuUGCUGuacc-UGCGCGaCUUCA- -5'
6574 5' -53.1 NC_001847.1 + 2229 0.68 0.908386
Target:  5'- aGCGCcGCGGCGcUGGGCGCGggcgUGuGGUa -3'
miRNA:   3'- -CGCGuUGCUGU-ACCUGCGCg---ACuUCA- -5'
6574 5' -53.1 NC_001847.1 + 2974 0.79 0.34946
Target:  5'- cGCGCAGCGccGCcgGGGCcgGCGCUGGAGc -3'
miRNA:   3'- -CGCGUUGC--UGuaCCUG--CGCGACUUCa -5'
6574 5' -53.1 NC_001847.1 + 3297 0.67 0.931421
Target:  5'- cGCGCAgcucggcgagcGCGGCGcGGGCGcCGCUGccGc -3'
miRNA:   3'- -CGCGU-----------UGCUGUaCCUGC-GCGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 3551 0.67 0.950433
Target:  5'- aGCGCGGCGGC---GGCGUaGUUGAGGg -3'
miRNA:   3'- -CGCGUUGCUGuacCUGCG-CGACUUCa -5'
6574 5' -53.1 NC_001847.1 + 3801 0.71 0.798456
Target:  5'- aGCGCAcGCGGCcgGGcggcggcgGCGCGCUGccGg -3'
miRNA:   3'- -CGCGU-UGCUGuaCC--------UGCGCGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 3908 0.67 0.936549
Target:  5'- cGCGCggUGGCGcGGACgcacgcacaGCGCUGGc-- -3'
miRNA:   3'- -CGCGuuGCUGUaCCUG---------CGCGACUuca -5'
6574 5' -53.1 NC_001847.1 + 4538 0.71 0.770095
Target:  5'- uCGCGGCGGCcgcccgcgGGugGCGCggcgugGAAGUg -3'
miRNA:   3'- cGCGUUGCUGua------CCugCGCGa-----CUUCA- -5'
6574 5' -53.1 NC_001847.1 + 4965 0.67 0.946053
Target:  5'- cGCGC-GCGcCggGGGgGCaGCUGggGUg -3'
miRNA:   3'- -CGCGuUGCuGuaCCUgCG-CGACuuCA- -5'
6574 5' -53.1 NC_001847.1 + 5008 0.76 0.522974
Target:  5'- aGCGCGGCGGCGgcGGCGCGgaGggGa -3'
miRNA:   3'- -CGCGUUGCUGUacCUGCGCgaCuuCa -5'
6574 5' -53.1 NC_001847.1 + 5220 0.67 0.92604
Target:  5'- cCGCGGCGGCcggcgGGGCGCGCgcgGcaAAGg -3'
miRNA:   3'- cGCGUUGCUGua---CCUGCGCGa--C--UUCa -5'
6574 5' -53.1 NC_001847.1 + 6684 0.66 0.958466
Target:  5'- cCGCGGCGGCcggccGGGCGCGCgcgcAGGg -3'
miRNA:   3'- cGCGUUGCUGua---CCUGCGCGac--UUCa -5'
6574 5' -53.1 NC_001847.1 + 7729 0.67 0.936549
Target:  5'- gGCGCAG-GGCGcGGGCGCGgaGgcGg -3'
miRNA:   3'- -CGCGUUgCUGUaCCUGCGCgaCuuCa -5'
6574 5' -53.1 NC_001847.1 + 10115 0.67 0.950433
Target:  5'- gGCGCcACGccCAcGGACGCGUgcugGGAGg -3'
miRNA:   3'- -CGCGuUGCu-GUaCCUGCGCGa---CUUCa -5'
6574 5' -53.1 NC_001847.1 + 10841 0.67 0.931421
Target:  5'- cGCGCGACGGC---GGCGCGUggccGAGGc -3'
miRNA:   3'- -CGCGUUGCUGuacCUGCGCGa---CUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.