miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6574 5' -53.1 NC_001847.1 + 50627 1.1 0.004061
Target:  5'- gGCGCAACGACAUGGACGCGCUGAAGUa -3'
miRNA:   3'- -CGCGUUGCUGUACCUGCGCGACUUCA- -5'
6574 5' -53.1 NC_001847.1 + 63872 0.94 0.04777
Target:  5'- uGCGCGACGGCugGGACGCGCUGGAGUg -3'
miRNA:   3'- -CGCGUUGCUGuaCCUGCGCGACUUCA- -5'
6574 5' -53.1 NC_001847.1 + 2974 0.79 0.34946
Target:  5'- cGCGCAGCGccGCcgGGGCcgGCGCUGGAGc -3'
miRNA:   3'- -CGCGUUGC--UGuaCCUG--CGCGACUUCa -5'
6574 5' -53.1 NC_001847.1 + 50252 0.78 0.391054
Target:  5'- aCGCGGCGAagcUGGACGCGCUGGGc- -3'
miRNA:   3'- cGCGUUGCUgu-ACCUGCGCGACUUca -5'
6574 5' -53.1 NC_001847.1 + 73237 0.78 0.391054
Target:  5'- gGgGCGGCGGCGcGGGCGCGCUcGAGGc -3'
miRNA:   3'- -CgCGUUGCUGUaCCUGCGCGA-CUUCa -5'
6574 5' -53.1 NC_001847.1 + 118987 0.77 0.435748
Target:  5'- aGCGCGGCGGCGUGcGACaugcugGCGCUGAu-- -3'
miRNA:   3'- -CGCGUUGCUGUAC-CUG------CGCGACUuca -5'
6574 5' -53.1 NC_001847.1 + 133792 0.77 0.445035
Target:  5'- gGCGCAAgGACAUGGccgcgcagggcGCgGCGCUGggGc -3'
miRNA:   3'- -CGCGUUgCUGUACC-----------UG-CGCGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 30979 0.77 0.445035
Target:  5'- gGCGCAAgGACAUGGccgcgcagggcGCgGCGCUGggGc -3'
miRNA:   3'- -CGCGUUgCUGUACC-----------UG-CGCGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 50812 0.77 0.454433
Target:  5'- aGCGCGuacaGCGAC-UGcGACGUGCUGggGa -3'
miRNA:   3'- -CGCGU----UGCUGuAC-CUGCGCGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 34677 0.77 0.463937
Target:  5'- cGCGCAGCGGCA-GGAggaGCGCUGgcGc -3'
miRNA:   3'- -CGCGUUGCUGUaCCUg--CGCGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 54355 0.77 0.473544
Target:  5'- aGCGCAACGA---GGACGCGCUGcgcGAGc -3'
miRNA:   3'- -CGCGUUGCUguaCCUGCGCGAC---UUCa -5'
6574 5' -53.1 NC_001847.1 + 107821 0.76 0.522974
Target:  5'- aGCGCGGCGGCGgcGGCGCGgaGggGa -3'
miRNA:   3'- -CGCGUUGCUGUacCUGCGCgaCuuCa -5'
6574 5' -53.1 NC_001847.1 + 5008 0.76 0.522974
Target:  5'- aGCGCGGCGGCGgcGGCGCGgaGggGa -3'
miRNA:   3'- -CGCGUUGCUGUacCUGCGCgaCuuCa -5'
6574 5' -53.1 NC_001847.1 + 55165 0.76 0.533105
Target:  5'- -aGCGGCcaGACGcgGGGCGCGCUGGAGc -3'
miRNA:   3'- cgCGUUG--CUGUa-CCUGCGCGACUUCa -5'
6574 5' -53.1 NC_001847.1 + 110105 0.76 0.533105
Target:  5'- cGCGCGACuGCAagcguggcaucaUGGGgGCGCUGAAGc -3'
miRNA:   3'- -CGCGUUGcUGU------------ACCUgCGCGACUUCa -5'
6574 5' -53.1 NC_001847.1 + 33803 0.76 0.533105
Target:  5'- cGCGCGGCG-CccGG-CGCGCUGGAGc -3'
miRNA:   3'- -CGCGUUGCuGuaCCuGCGCGACUUCa -5'
6574 5' -53.1 NC_001847.1 + 86517 0.75 0.543306
Target:  5'- cGCGCGGCGGC-UGGGCGCccgcguGCUGgcGg -3'
miRNA:   3'- -CGCGUUGCUGuACCUGCG------CGACuuCa -5'
6574 5' -53.1 NC_001847.1 + 29672 0.75 0.553571
Target:  5'- aGCGCaAACGGCGUGG-CGCaGCUGAu-- -3'
miRNA:   3'- -CGCG-UUGCUGUACCuGCG-CGACUuca -5'
6574 5' -53.1 NC_001847.1 + 78065 0.75 0.553571
Target:  5'- aGCGCAGCG-C-UGGccgcCGCGCUGggGUu -3'
miRNA:   3'- -CGCGUUGCuGuACCu---GCGCGACuuCA- -5'
6574 5' -53.1 NC_001847.1 + 129686 0.75 0.574263
Target:  5'- cCGCAgagaGCGGCcgGGACGCGCuugUGGAGc -3'
miRNA:   3'- cGCGU----UGCUGuaCCUGCGCG---ACUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.