miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6585 5' -58.8 NC_001847.1 + 15851 0.65 0.774747
Target:  5'- cGUCGAuguacagcGCGCGUCgguacugGCCcucgacgagccgcGCGGGCGCc- -3'
miRNA:   3'- -CAGCU--------CGCGCAGa------UGG-------------CGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 43543 0.66 0.747253
Target:  5'- -gCGAGgagaaGCG-CcGCCGCGAGCGCc- -3'
miRNA:   3'- caGCUCg----CGCaGaUGGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 102695 0.66 0.747253
Target:  5'- -gCGGGCGUGUgCUGCgGC-AGCGCc- -3'
miRNA:   3'- caGCUCGCGCA-GAUGgCGcUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 92685 0.66 0.747253
Target:  5'- --gGGGCGCGgaacgcacccUCUGCCcaCGAGCGCg- -3'
miRNA:   3'- cagCUCGCGC----------AGAUGGc-GCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 75527 0.66 0.744357
Target:  5'- -gCGGGCgGCGUCUGCauugcgcuucccguCGCGGGCGg-- -3'
miRNA:   3'- caGCUCG-CGCAGAUG--------------GCGCUCGCgau -5'
6585 5' -58.8 NC_001847.1 + 68851 0.66 0.737566
Target:  5'- cUCGGGCGCGaggCgGCgGCGuGCGCc- -3'
miRNA:   3'- cAGCUCGCGCa--GaUGgCGCuCGCGau -5'
6585 5' -58.8 NC_001847.1 + 45766 0.66 0.737566
Target:  5'- -aCGuGCGCGUCUaagucAUCGCGcacGGCGCc- -3'
miRNA:   3'- caGCuCGCGCAGA-----UGGCGC---UCGCGau -5'
6585 5' -58.8 NC_001847.1 + 30950 0.66 0.737566
Target:  5'- -cCGgcAGCGCGUgCUGCCGgcgcucgaCGGGCGCa- -3'
miRNA:   3'- caGC--UCGCGCA-GAUGGC--------GCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 123225 0.66 0.737566
Target:  5'- --aGGGCGCcuagaaaGCCGCGGGCGCg- -3'
miRNA:   3'- cagCUCGCGcaga---UGGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 16669 0.66 0.753975
Target:  5'- -gCGGGCGCGUCgcgcagccuugGCUGCGcgggcgagccggcaGGCGCa- -3'
miRNA:   3'- caGCUCGCGCAGa----------UGGCGC--------------UCGCGau -5'
6585 5' -58.8 NC_001847.1 + 55486 0.66 0.753975
Target:  5'- aUCGuGGCGCGgCUccggcagugguucgGCgGCGAGCGCg- -3'
miRNA:   3'- cAGC-UCGCGCaGA--------------UGgCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 57885 0.66 0.75684
Target:  5'- -aCGAGgGUGUCgcCCGCcAGCGCc- -3'
miRNA:   3'- caGCUCgCGCAGauGGCGcUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 29709 0.66 0.766318
Target:  5'- cUUGGGCGCGag-ACUGCG-GCGCg- -3'
miRNA:   3'- cAGCUCGCGCagaUGGCGCuCGCGau -5'
6585 5' -58.8 NC_001847.1 + 31334 0.66 0.766318
Target:  5'- gGUgGAGCGCGUgCcGCCGCcGGCGg-- -3'
miRNA:   3'- -CAgCUCGCGCA-GaUGGCGcUCGCgau -5'
6585 5' -58.8 NC_001847.1 + 94368 0.66 0.766318
Target:  5'- -gCGcGGCgGCGUCUGCCGC--GCGCa- -3'
miRNA:   3'- caGC-UCG-CGCAGAUGGCGcuCGCGau -5'
6585 5' -58.8 NC_001847.1 + 14133 0.66 0.765375
Target:  5'- -gCGGGCGUGUCUccggccgGCUGCGcAGCGg-- -3'
miRNA:   3'- caGCUCGCGCAGA-------UGGCGC-UCGCgau -5'
6585 5' -58.8 NC_001847.1 + 46920 0.66 0.757793
Target:  5'- --gGGGCGCGUCgggcccgggcuccggGCCGCGuGCGg-- -3'
miRNA:   3'- cagCUCGCGCAGa--------------UGGCGCuCGCgau -5'
6585 5' -58.8 NC_001847.1 + 57794 0.66 0.75684
Target:  5'- cGUCGcacGGCGUGUC-GCCGCccagcAGCGCg- -3'
miRNA:   3'- -CAGC---UCGCGCAGaUGGCGc----UCGCGau -5'
6585 5' -58.8 NC_001847.1 + 80175 0.66 0.75684
Target:  5'- aGUUGuGCGCG-CUGCCGUcaaaGAGCGg-- -3'
miRNA:   3'- -CAGCuCGCGCaGAUGGCG----CUCGCgau -5'
6585 5' -58.8 NC_001847.1 + 79796 0.66 0.75684
Target:  5'- -cCGcGGCGCGUUcagcaccGCCGCGAGCGg-- -3'
miRNA:   3'- caGC-UCGCGCAGa------UGGCGCUCGCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.