miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6585 5' -58.8 NC_001847.1 + 1093 0.67 0.697995
Target:  5'- -cCGGGCGCcgcgGCCGCGGGCGg-- -3'
miRNA:   3'- caGCUCGCGcagaUGGCGCUCGCgau -5'
6585 5' -58.8 NC_001847.1 + 1906 0.69 0.546109
Target:  5'- -gCGAGCGCGUgCgagagcccGCCGCG-GCGCg- -3'
miRNA:   3'- caGCUCGCGCA-Ga-------UGGCGCuCGCGau -5'
6585 5' -58.8 NC_001847.1 + 2120 0.66 0.737566
Target:  5'- cGUCGgccgaggccAGUGCGUCUACCagGUuuGCGCUGc -3'
miRNA:   3'- -CAGC---------UCGCGCAGAUGG--CGcuCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 3308 0.71 0.448605
Target:  5'- -gCGAGCGCGgcgcgggcgccgCUGCCGCcGGCGCc- -3'
miRNA:   3'- caGCUCGCGCa-----------GAUGGCGcUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 3525 0.67 0.667708
Target:  5'- -aCGGGcCGUGgccgaCUacgGCCGCGAGCGCg- -3'
miRNA:   3'- caGCUC-GCGCa----GA---UGGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 3816 0.75 0.284228
Target:  5'- -aCGGG-GCGUCgGCCGCGAGCGUg- -3'
miRNA:   3'- caGCUCgCGCAGaUGGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 4384 0.71 0.450428
Target:  5'- -gCGAGCGCGcgcGCCGCGgcccaGGCGCUGu -3'
miRNA:   3'- caGCUCGCGCagaUGGCGC-----UCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 5066 0.66 0.747253
Target:  5'- gGUCGGGCGCGgcccaggACgGCGAcGCGUc- -3'
miRNA:   3'- -CAGCUCGCGCaga----UGgCGCU-CGCGau -5'
6585 5' -58.8 NC_001847.1 + 5200 0.66 0.737566
Target:  5'- -gCGAGCGCGgcaagCgcGCCGCGAcggaagcuGCGCa- -3'
miRNA:   3'- caGCUCGCGCa----Ga-UGGCGCU--------CGCGau -5'
6585 5' -58.8 NC_001847.1 + 7207 0.71 0.468871
Target:  5'- cUCGAGCGCGgCUggGCCGUccauGGCGCUGc -3'
miRNA:   3'- cAGCUCGCGCaGA--UGGCGc---UCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 7260 0.67 0.677844
Target:  5'- -gCGGGCGCGgCggggGCaCGCGAGaCGCUc -3'
miRNA:   3'- caGCUCGCGCaGa---UG-GCGCUC-GCGAu -5'
6585 5' -58.8 NC_001847.1 + 7360 0.68 0.637163
Target:  5'- cGUC-AGCGCG-CUGCUGCcGGCGCc- -3'
miRNA:   3'- -CAGcUCGCGCaGAUGGCGcUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 8386 0.7 0.506864
Target:  5'- -gCGuGgGCGUCUGCCGCGuAG-GCUAc -3'
miRNA:   3'- caGCuCgCGCAGAUGGCGC-UCgCGAU- -5'
6585 5' -58.8 NC_001847.1 + 10913 0.68 0.657543
Target:  5'- -gCG-GCGCGguaCUACCGCGAG-GCg- -3'
miRNA:   3'- caGCuCGCGCa--GAUGGCGCUCgCGau -5'
6585 5' -58.8 NC_001847.1 + 11241 0.68 0.616765
Target:  5'- --gGAGcCGcCGUUuucgggaagcuUGCCGCGGGCGCUGg -3'
miRNA:   3'- cagCUC-GC-GCAG-----------AUGGCGCUCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 11568 0.73 0.37032
Target:  5'- -gCGGGUGCGgCUGCCGCGGugccgguugcuucuGCGCUGg -3'
miRNA:   3'- caGCUCGCGCaGAUGGCGCU--------------CGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 13824 0.68 0.657543
Target:  5'- -gCGAGCGagauCGUUUGCCGCGcgcGGCGUUu -3'
miRNA:   3'- caGCUCGC----GCAGAUGGCGC---UCGCGAu -5'
6585 5' -58.8 NC_001847.1 + 14033 0.69 0.596415
Target:  5'- --aGAgGCGCugGUCgGCCGCGAGcCGCUAg -3'
miRNA:   3'- cagCU-CGCG--CAGaUGGCGCUC-GCGAU- -5'
6585 5' -58.8 NC_001847.1 + 14133 0.66 0.765375
Target:  5'- -gCGGGCGUGUCUccggccgGCUGCGcAGCGg-- -3'
miRNA:   3'- caGCUCGCGCAGA-------UGGCGC-UCGCgau -5'
6585 5' -58.8 NC_001847.1 + 14448 0.67 0.707992
Target:  5'- -cCGAGCGCGcggccgcgCUGCUcgGCGuGCGCUc -3'
miRNA:   3'- caGCUCGCGCa-------GAUGG--CGCuCGCGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.