miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6585 5' -58.8 NC_001847.1 + 56630 1.06 0.002148
Target:  5'- gGUCGAGCGCGUCUACCGCGAGCGCUAc -3'
miRNA:   3'- -CAGCUCGCGCAGAUGGCGCUCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 107197 0.71 0.450428
Target:  5'- -gCGAGCGCGcgcGCCGCGgcccaGGCGCUGu -3'
miRNA:   3'- caGCUCGCGCagaUGGCGC-----UCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 69323 0.71 0.4596
Target:  5'- uUUGGGCGCGg--GCCuCGGGCGCUGc -3'
miRNA:   3'- cAGCUCGCGCagaUGGcGCUCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 29709 0.66 0.766318
Target:  5'- cUUGGGCGCGag-ACUGCG-GCGCg- -3'
miRNA:   3'- cAGCUCGCGCagaUGGCGCuCGCGau -5'
6585 5' -58.8 NC_001847.1 + 3816 0.75 0.284228
Target:  5'- -aCGGG-GCGUCgGCCGCGAGCGUg- -3'
miRNA:   3'- caGCUCgCGCAGaUGGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 33629 0.74 0.31176
Target:  5'- -aCGGGCGCGgcggCUgACCGCGAGgCGCg- -3'
miRNA:   3'- caGCUCGCGCa---GA-UGGCGCUC-GCGau -5'
6585 5' -58.8 NC_001847.1 + 70189 0.73 0.352066
Target:  5'- uUCGAGCGCGgcacggcggaccagCUGCUGCGcGUGCUGc -3'
miRNA:   3'- cAGCUCGCGCa-------------GAUGGCGCuCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 80425 0.73 0.356766
Target:  5'- aGUCGAggaaggggacccGCGCGUCguccuccCCGCGGGCGCc- -3'
miRNA:   3'- -CAGCU------------CGCGCAGau-----GGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 78414 0.72 0.397619
Target:  5'- -gCGGGCGCGcugCUGgCGCGcGCGCUGa -3'
miRNA:   3'- caGCUCGCGCa--GAUgGCGCuCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 106121 0.71 0.448605
Target:  5'- -gCGAGCGCGgcgcgggcgccgCUGCCGCcGGCGCc- -3'
miRNA:   3'- caGCUCGCGCa-----------GAUGGCGcUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 118965 0.72 0.423531
Target:  5'- cGUCGAgGUGCG-CUACgCGaCGAGCGCg- -3'
miRNA:   3'- -CAGCU-CGCGCaGAUG-GC-GCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 30505 0.73 0.372749
Target:  5'- cUCGGGCGCGcgCUagacgacaguGCCgGCGAGCGCg- -3'
miRNA:   3'- cAGCUCGCGCa-GA----------UGG-CGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 34317 0.8 0.128631
Target:  5'- uUCGGGCGCGcuugcgUCUGCgGCGAGCGCa- -3'
miRNA:   3'- cAGCUCGCGC------AGAUGgCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 130489 0.71 0.43239
Target:  5'- cUCGAcgcgGCGCGUCgggcugagGCgCGCGAGCGCc- -3'
miRNA:   3'- cAGCU----CGCGCAGa-------UG-GCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 83101 0.76 0.223855
Target:  5'- uUCGGGCGCGauaaugagcccCUGgCGCGAGCGCUAg -3'
miRNA:   3'- cAGCUCGCGCa----------GAUgGCGCUCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 43812 0.73 0.362305
Target:  5'- gGUCGAGgGCGacggcggccgcuucUUUGCCGCGcuGGCGCUGc -3'
miRNA:   3'- -CAGCUCgCGC--------------AGAUGGCGC--UCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 78656 0.71 0.435964
Target:  5'- gGUCGcGCGCGcCUgcgucgccggcgugcGCaCGCGGGCGCUGg -3'
miRNA:   3'- -CAGCuCGCGCaGA---------------UG-GCGCUCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 66490 0.71 0.4596
Target:  5'- cGUCGuGCGUGUCgGCCaGCG-GCGCg- -3'
miRNA:   3'- -CAGCuCGCGCAGaUGG-CGCuCGCGau -5'
6585 5' -58.8 NC_001847.1 + 26984 0.75 0.277652
Target:  5'- -gCGcAGCGCGUCUGCgGCG-GCGCg- -3'
miRNA:   3'- caGC-UCGCGCAGAUGgCGCuCGCGau -5'
6585 5' -58.8 NC_001847.1 + 85847 0.74 0.318952
Target:  5'- cGUCGAGCGCGUCgcUGgCGCGgauguuauacGGCGCg- -3'
miRNA:   3'- -CAGCUCGCGCAG--AUgGCGC----------UCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.