miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6585 5' -58.8 NC_001847.1 + 56630 1.06 0.002148
Target:  5'- gGUCGAGCGCGUCUACCGCGAGCGCUAc -3'
miRNA:   3'- -CAGCUCGCGCAGAUGGCGCUCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 34317 0.8 0.128631
Target:  5'- uUCGGGCGCGcuugcgUCUGCgGCGAGCGCa- -3'
miRNA:   3'- cAGCUCGCGC------AGAUGgCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 20903 0.79 0.157925
Target:  5'- -gCGAGCGCGUCgcggGCGAGCGCUAc -3'
miRNA:   3'- caGCUCGCGCAGauggCGCUCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 83101 0.76 0.223855
Target:  5'- uUCGGGCGCGauaaugagcccCUGgCGCGAGCGCUAg -3'
miRNA:   3'- cAGCUCGCGCa----------GAUgGCGCUCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 45206 0.75 0.258653
Target:  5'- cUCGcAGCGCGagcgCcGCCGCGAGCGCg- -3'
miRNA:   3'- cAGC-UCGCGCa---GaUGGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 26984 0.75 0.277652
Target:  5'- -gCGcAGCGCGUCUGCgGCG-GCGCg- -3'
miRNA:   3'- caGC-UCGCGCAGAUGgCGCuCGCGau -5'
6585 5' -58.8 NC_001847.1 + 51219 0.75 0.284228
Target:  5'- uUCGAGCGgGccCUGCuCGCGGGCGCg- -3'
miRNA:   3'- cAGCUCGCgCa-GAUG-GCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 3816 0.75 0.284228
Target:  5'- -aCGGG-GCGUCgGCCGCGAGCGUg- -3'
miRNA:   3'- caGCUCgCGCAGaUGGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 129942 0.75 0.284228
Target:  5'- cGUCGcGGCGCGcUUGCCGCGcucgcGGCGCUGu -3'
miRNA:   3'- -CAGC-UCGCGCaGAUGGCGC-----UCGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 132757 0.74 0.297747
Target:  5'- -cCGAGCGCGUC-ACCGCcgucuucgcGGGCGCg- -3'
miRNA:   3'- caGCUCGCGCAGaUGGCG---------CUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 55031 0.74 0.304692
Target:  5'- cGUCGGGCGCGUUUgcgcaggugGCCGCGuucgucGCGCg- -3'
miRNA:   3'- -CAGCUCGCGCAGA---------UGGCGCu-----CGCGau -5'
6585 5' -58.8 NC_001847.1 + 83151 0.74 0.304692
Target:  5'- cGUCGGGCGCGU---CCGCGAuGCGCc- -3'
miRNA:   3'- -CAGCUCGCGCAgauGGCGCU-CGCGau -5'
6585 5' -58.8 NC_001847.1 + 33629 0.74 0.31176
Target:  5'- -aCGGGCGCGgcggCUgACCGCGAGgCGCg- -3'
miRNA:   3'- caGCUCGCGCa---GA-UGGCGCUC-GCGau -5'
6585 5' -58.8 NC_001847.1 + 85847 0.74 0.318952
Target:  5'- cGUCGAGCGCGUCgcUGgCGCGgauguuauacGGCGCg- -3'
miRNA:   3'- -CAGCUCGCGCAG--AUgGCGC----------UCGCGau -5'
6585 5' -58.8 NC_001847.1 + 113966 0.74 0.318952
Target:  5'- -cCGGGCGCGUC-GCCGCaGAaGCGCUc -3'
miRNA:   3'- caGCUCGCGCAGaUGGCG-CU-CGCGAu -5'
6585 5' -58.8 NC_001847.1 + 96023 0.74 0.326268
Target:  5'- -gCGcGGCGCGUCggccGCCGCGuuGCGCUAa -3'
miRNA:   3'- caGC-UCGCGCAGa---UGGCGCu-CGCGAU- -5'
6585 5' -58.8 NC_001847.1 + 38930 0.74 0.327006
Target:  5'- -aUGAGCGuCGUCgucccgggcccggggGCCGCGAGCGCc- -3'
miRNA:   3'- caGCUCGC-GCAGa--------------UGGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 133270 0.73 0.333707
Target:  5'- uGUUG-GCGCGUCUaaGCCGCGcgguGCGCUc -3'
miRNA:   3'- -CAGCuCGCGCAGA--UGGCGCu---CGCGAu -5'
6585 5' -58.8 NC_001847.1 + 102091 0.73 0.333707
Target:  5'- -cCGcAGCGCcUCgGCCGCGAGCGCg- -3'
miRNA:   3'- caGC-UCGCGcAGaUGGCGCUCGCGau -5'
6585 5' -58.8 NC_001847.1 + 115793 0.73 0.34127
Target:  5'- cGUCGGGCGCG-CgcaagacccgGCCGCG-GCGCUu -3'
miRNA:   3'- -CAGCUCGCGCaGa---------UGGCGCuCGCGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.