miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6589 5' -59.6 NC_001847.1 + 42088 0.66 0.799388
Target:  5'- -aUCGGCCUCgcggugccggcacCGUCcaGGCGcCGGGGg -3'
miRNA:   3'- gcAGCCGGAGaa-----------GCAGc-CCGC-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 92490 0.66 0.75083
Target:  5'- gCGgCGGCCUCUUCGacaaaGGGCaCGAc- -3'
miRNA:   3'- -GCaGCCGGAGAAGCag---CCCGcGCUcc -5'
6589 5' -59.6 NC_001847.1 + 116273 0.66 0.769214
Target:  5'- -cUCGGCCUCUaCG-CuGGC-CGAGGc -3'
miRNA:   3'- gcAGCCGGAGAaGCaGcCCGcGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 87769 0.66 0.795917
Target:  5'- uCGUCGaGC----UCGUCGGGCcGcCGGGGg -3'
miRNA:   3'- -GCAGC-CGgagaAGCAGCCCG-C-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 77426 0.66 0.75083
Target:  5'- gCGagGGCUUCgUCGUCGuGGCGUacGAGc -3'
miRNA:   3'- -GCagCCGGAGaAGCAGC-CCGCG--CUCc -5'
6589 5' -59.6 NC_001847.1 + 90073 0.66 0.757312
Target:  5'- gGUCGGCCaacaaauacuggcUCUgggacgccaccgCGggGGGCGCuGAGGg -3'
miRNA:   3'- gCAGCCGG-------------AGAa-----------GCagCCCGCG-CUCC- -5'
6589 5' -59.6 NC_001847.1 + 59883 0.66 0.760075
Target:  5'- gCG-CGGCCUCcgCGUUGG-CGagGAGGg -3'
miRNA:   3'- -GCaGCCGGAGaaGCAGCCcGCg-CUCC- -5'
6589 5' -59.6 NC_001847.1 + 80038 0.66 0.777342
Target:  5'- gGUCGGCgUCaUCGcCGccgccgaGGUGCGAGa -3'
miRNA:   3'- gCAGCCGgAGaAGCaGC-------CCGCGCUCc -5'
6589 5' -59.6 NC_001847.1 + 30416 0.66 0.760075
Target:  5'- cCGcCGGCaagC-UCGUggCGGGCGCgGAGGc -3'
miRNA:   3'- -GCaGCCGga-GaAGCA--GCCCGCG-CUCC- -5'
6589 5' -59.6 NC_001847.1 + 49460 0.66 0.760075
Target:  5'- gGUCGGCgUCUUCGcCGGccugGCGCu--- -3'
miRNA:   3'- gCAGCCGgAGAAGCaGCC----CGCGcucc -5'
6589 5' -59.6 NC_001847.1 + 18388 0.66 0.760075
Target:  5'- -cUCGGCgUCcUCGcccugCGGGCccGCGGGGc -3'
miRNA:   3'- gcAGCCGgAGaAGCa----GCCCG--CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 104420 0.66 0.769214
Target:  5'- aGUCGGCCacgUCcgCG-CGGGCGuCcAGGa -3'
miRNA:   3'- gCAGCCGG---AGaaGCaGCCCGC-GcUCC- -5'
6589 5' -59.6 NC_001847.1 + 104112 0.66 0.795917
Target:  5'- aCGUCGGCCgg--CGUUGccGGCGCGc-- -3'
miRNA:   3'- -GCAGCCGGagaaGCAGC--CCGCGCucc -5'
6589 5' -59.6 NC_001847.1 + 59722 0.66 0.795917
Target:  5'- gGUCGcgaucGCgCUCggCGUCcGGCGCGAGc -3'
miRNA:   3'- gCAGC-----CG-GAGaaGCAGcCCGCGCUCc -5'
6589 5' -59.6 NC_001847.1 + 28126 0.66 0.795917
Target:  5'- ---aGGCCggCgaCGUUGGGCcCGAGGa -3'
miRNA:   3'- gcagCCGGa-GaaGCAGCCCGcGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 96632 0.66 0.787143
Target:  5'- gCGggGGCCggCggguacgCGUCGuGCGCGGGGg -3'
miRNA:   3'- -GCagCCGGa-Gaa-----GCAGCcCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 82075 0.66 0.77824
Target:  5'- aGcCGGgCUCggCGUCuGGGCcaagcGCGGGGc -3'
miRNA:   3'- gCaGCCgGAGaaGCAG-CCCG-----CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 4672 0.66 0.786259
Target:  5'- gCGUCgagcagGGCCgggUCUUccuccgagcccccCGUCGGGC-CGAGGu -3'
miRNA:   3'- -GCAG------CCGG---AGAA-------------GCAGCCCGcGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 61436 0.66 0.769214
Target:  5'- cCG-CGGCCgCgcCGcCGGGCgcgGCGAGGc -3'
miRNA:   3'- -GCaGCCGGaGaaGCaGCCCG---CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 16904 0.66 0.769214
Target:  5'- uCGcCGGUCUCg-CG-CGGGCGgGAGu -3'
miRNA:   3'- -GCaGCCGGAGaaGCaGCCCGCgCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.