miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6589 5' -59.6 NC_001847.1 + 60035 1.09 0.001478
Target:  5'- cCGUCGGCCUCUUCGUCGGGCGCGAGGc -3'
miRNA:   3'- -GCAGCCGGAGAAGCAGCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 17842 0.83 0.096715
Target:  5'- aCGUCGGCgaaacagaggUCGUCGGGCGCGGGGc -3'
miRNA:   3'- -GCAGCCGgaga------AGCAGCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 79583 0.79 0.16938
Target:  5'- uCG-CGGCCUCUUCGggcggGGGCGcCGGGGg -3'
miRNA:   3'- -GCaGCCGGAGAAGCag---CCCGC-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 49506 0.79 0.173563
Target:  5'- -aUCGGCgCcgCUUCGcCGGGCGCGGGGc -3'
miRNA:   3'- gcAGCCG-Ga-GAAGCaGCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 125469 0.76 0.253906
Target:  5'- gGUCGGCggcagCUCg-CGgCGGGCGCGAGGa -3'
miRNA:   3'- gCAGCCG-----GAGaaGCaGCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 15542 0.76 0.259828
Target:  5'- ---gGGCCUCgUCGUCGccggguGGCGCGGGGg -3'
miRNA:   3'- gcagCCGGAGaAGCAGC------CCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 54422 0.73 0.369379
Target:  5'- gGUUGGCCUCggCGgccCGGGCagagacgagggggGCGGGGa -3'
miRNA:   3'- gCAGCCGGAGaaGCa--GCCCG-------------CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 58374 0.72 0.410626
Target:  5'- aCGUCGGCCUCguaG-CGGGUGcCGGcGGg -3'
miRNA:   3'- -GCAGCCGGAGaagCaGCCCGC-GCU-CC- -5'
6589 5' -59.6 NC_001847.1 + 17621 0.72 0.419042
Target:  5'- --aCGGCCUCgUCGUCGccGCGCGuGGa -3'
miRNA:   3'- gcaGCCGGAGaAGCAGCc-CGCGCuCC- -5'
6589 5' -59.6 NC_001847.1 + 60449 0.72 0.444908
Target:  5'- gCGUCGGCg-CUgccccCGUCGGGCGCGu-- -3'
miRNA:   3'- -GCAGCCGgaGAa----GCAGCCCGCGCucc -5'
6589 5' -59.6 NC_001847.1 + 83135 0.72 0.453727
Target:  5'- uCGgCGGCCgccgCggCGUCGGGCGCGu-- -3'
miRNA:   3'- -GCaGCCGGa---GaaGCAGCCCGCGCucc -5'
6589 5' -59.6 NC_001847.1 + 103598 0.71 0.46264
Target:  5'- gCGcCGGCCUCgUCGUCGucCGaCGAGGc -3'
miRNA:   3'- -GCaGCCGGAGaAGCAGCccGC-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 785 0.71 0.46264
Target:  5'- gCGcCGGCCUCgUCGUCGucCGaCGAGGc -3'
miRNA:   3'- -GCaGCCGGAGaAGCAGCccGC-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 116121 0.71 0.46264
Target:  5'- -cUCGGCCUU-UCGgcCGGGCGCuGGGGc -3'
miRNA:   3'- gcAGCCGGAGaAGCa-GCCCGCG-CUCC- -5'
6589 5' -59.6 NC_001847.1 + 59673 0.71 0.480736
Target:  5'- uCGaCGGCCUCUUUGUCGc-CGuCGAGGg -3'
miRNA:   3'- -GCaGCCGGAGAAGCAGCccGC-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 20758 0.71 0.508504
Target:  5'- ---gGGCCUCgccuUCGUCGGcGCgcagauGCGAGGg -3'
miRNA:   3'- gcagCCGGAGa---AGCAGCC-CG------CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 124699 0.7 0.517911
Target:  5'- aCG-CGGCCaggggaGcCGGGCGCGGGGg -3'
miRNA:   3'- -GCaGCCGGagaag-CaGCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 132763 0.7 0.527387
Target:  5'- gCGUCaccGCCgUCUUCG-CGGGCGCGcgacuGGa -3'
miRNA:   3'- -GCAGc--CGG-AGAAGCaGCCCGCGCu----CC- -5'
6589 5' -59.6 NC_001847.1 + 62877 0.7 0.527387
Target:  5'- aGUUGGCCaccaggUUCGUCGGGUGCagcGGGu -3'
miRNA:   3'- gCAGCCGGag----AAGCAGCCCGCGc--UCC- -5'
6589 5' -59.6 NC_001847.1 + 27431 0.7 0.536927
Target:  5'- gGUCGGUgUCgUUCG-CaGcGGCGCGGGGg -3'
miRNA:   3'- gCAGCCGgAG-AAGCaG-C-CCGCGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.