miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6589 5' -59.6 NC_001847.1 + 60035 1.09 0.001478
Target:  5'- cCGUCGGCCUCUUCGUCGGGCGCGAGGc -3'
miRNA:   3'- -GCAGCCGGAGAAGCAGCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 68527 0.67 0.703314
Target:  5'- cCGUCGGgaucguCCUCgcCGUCGguugcgccagaaGGgGCGAGGg -3'
miRNA:   3'- -GCAGCC------GGAGaaGCAGC------------CCgCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 83251 0.67 0.712962
Target:  5'- gCGgCGGCCgaaagcgCggCGggggCGGGCGCaGAGGc -3'
miRNA:   3'- -GCaGCCGGa------GaaGCa---GCCCGCG-CUCC- -5'
6589 5' -59.6 NC_001847.1 + 87769 0.66 0.795917
Target:  5'- uCGUCGaGC----UCGUCGGGCcGcCGGGGg -3'
miRNA:   3'- -GCAGC-CGgagaAGCAGCCCG-C-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 103598 0.71 0.46264
Target:  5'- gCGcCGGCCUCgUCGUCGucCGaCGAGGc -3'
miRNA:   3'- -GCaGCCGGAGaAGCAGCccGC-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 20758 0.71 0.508504
Target:  5'- ---gGGCCUCgccuUCGUCGGcGCgcagauGCGAGGg -3'
miRNA:   3'- gcagCCGGAGa---AGCAGCC-CG------CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 134487 0.69 0.574648
Target:  5'- aGUgCGGCUcuuUCUUCauuGUCGGGCcucggggGCGGGGg -3'
miRNA:   3'- gCA-GCCGG---AGAAG---CAGCCCG-------CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 134894 0.69 0.585407
Target:  5'- ---gGGCCcCUgggcgccgggCGUCgGGGCGCGAGGc -3'
miRNA:   3'- gcagCCGGaGAa---------GCAG-CCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 131353 0.68 0.653412
Target:  5'- --cCGGCCgcgugcgCUUCGgcggcgCGGGCgacacccGCGAGGg -3'
miRNA:   3'- gcaGCCGGa------GAAGCa-----GCCCG-------CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 102271 0.67 0.693611
Target:  5'- ---aGGCCUCgcCGUCGGccgcCGUGAGGu -3'
miRNA:   3'- gcagCCGGAGaaGCAGCCc---GCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 18004 0.68 0.683859
Target:  5'- gCGUCGGgg-CU--GUUGGGCGUGGGGg -3'
miRNA:   3'- -GCAGCCggaGAagCAGCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 77648 0.68 0.634661
Target:  5'- cCGUggaGGCCU--UCGacgCGGGCGcCGAGGu -3'
miRNA:   3'- -GCAg--CCGGAgaAGCa--GCCCGC-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 54422 0.73 0.369379
Target:  5'- gGUUGGCCUCggCGgccCGGGCagagacgagggggGCGGGGa -3'
miRNA:   3'- gCAGCCGGAGaaGCa--GCCCG-------------CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 23770 0.68 0.683859
Target:  5'- -cUUGGCCag--CGgaugccCGGGCGCGAGGu -3'
miRNA:   3'- gcAGCCGGagaaGCa-----GCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 17621 0.72 0.419042
Target:  5'- --aCGGCCUCgUCGUCGccGCGCGuGGa -3'
miRNA:   3'- gcaGCCGGAGaAGCAGCc-CGCGCuCC- -5'
6589 5' -59.6 NC_001847.1 + 104006 0.69 0.614916
Target:  5'- cCG-CGGCCggcagC-UCGUCGGGCGCcAGc -3'
miRNA:   3'- -GCaGCCGGa----GaAGCAGCCCGCGcUCc -5'
6589 5' -59.6 NC_001847.1 + 112899 0.67 0.693611
Target:  5'- uCGUCGGCUUCUuccugcUCGgcuacaCGGGCGCc--- -3'
miRNA:   3'- -GCAGCCGGAGA------AGCa-----GCCCGCGcucc -5'
6589 5' -59.6 NC_001847.1 + 20487 0.67 0.703314
Target:  5'- aCGUUGGCgaggaagacggCUCgcgcgUCGUCGcGG-GCGGGGg -3'
miRNA:   3'- -GCAGCCG-----------GAGa----AGCAGC-CCgCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 60449 0.72 0.444908
Target:  5'- gCGUCGGCg-CUgccccCGUCGGGCGCGu-- -3'
miRNA:   3'- -GCAGCCGgaGAa----GCAGCCCGCGCucc -5'
6589 5' -59.6 NC_001847.1 + 130244 0.7 0.536927
Target:  5'- gGUCGGUgUCgUUCG-CaGcGGCGCGGGGg -3'
miRNA:   3'- gCAGCCGgAG-AAGCaG-C-CCGCGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.