miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6589 5' -59.6 NC_001847.1 + 785 0.71 0.46264
Target:  5'- gCGcCGGCCUCgUCGUCGucCGaCGAGGc -3'
miRNA:   3'- -GCaGCCGGAGaAGCAGCccGC-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 1193 0.69 0.614916
Target:  5'- cCG-CGGCCggcagC-UCGUCGGGCGCcAGc -3'
miRNA:   3'- -GCaGCCGGa----GaAGCAGCCCGCGcUCc -5'
6589 5' -59.6 NC_001847.1 + 4672 0.66 0.786259
Target:  5'- gCGUCgagcagGGCCgggUCUUccuccgagcccccCGUCGGGC-CGAGGu -3'
miRNA:   3'- -GCAG------CCGG---AGAA-------------GCAGCCCGcGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 10086 0.67 0.693611
Target:  5'- uCGUCGGCUUCUuccugcUCGgcuacaCGGGCGCc--- -3'
miRNA:   3'- -GCAGCCGGAGA------AGCa-----GCCCGCGcucc -5'
6589 5' -59.6 NC_001847.1 + 13820 0.66 0.77824
Target:  5'- aCGggGGCCgg--CGUgugaCGGuGCGCGAGGg -3'
miRNA:   3'- -GCagCCGGagaaGCA----GCC-CGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 15542 0.76 0.259828
Target:  5'- ---gGGCCUCgUCGUCGccggguGGCGCGGGGg -3'
miRNA:   3'- gcagCCGGAGaAGCAGC------CCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 16904 0.66 0.769214
Target:  5'- uCGcCGGUCUCg-CG-CGGGCGgGAGu -3'
miRNA:   3'- -GCaGCCGGAGaaGCaGCCCGCgCUCc -5'
6589 5' -59.6 NC_001847.1 + 17621 0.72 0.419042
Target:  5'- --aCGGCCUCgUCGUCGccGCGCGuGGa -3'
miRNA:   3'- gcaGCCGGAGaAGCAGCc-CGCGCuCC- -5'
6589 5' -59.6 NC_001847.1 + 17842 0.83 0.096715
Target:  5'- aCGUCGGCgaaacagaggUCGUCGGGCGCGGGGc -3'
miRNA:   3'- -GCAGCCGgaga------AGCAGCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 18004 0.68 0.683859
Target:  5'- gCGUCGGgg-CU--GUUGGGCGUGGGGg -3'
miRNA:   3'- -GCAGCCggaGAagCAGCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 18388 0.66 0.760075
Target:  5'- -cUCGGCgUCcUCGcccugCGGGCccGCGGGGc -3'
miRNA:   3'- gcAGCCGgAGaAGCa----GCCCG--CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 19883 0.66 0.77824
Target:  5'- uGgCGGCg-CUgg--CGGGCGCGAGGu -3'
miRNA:   3'- gCaGCCGgaGAagcaGCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 20487 0.67 0.703314
Target:  5'- aCGUUGGCgaggaagacggCUCgcgcgUCGUCGcGG-GCGGGGg -3'
miRNA:   3'- -GCAGCCG-----------GAGa----AGCAGC-CCgCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 20758 0.71 0.508504
Target:  5'- ---gGGCCUCgccuUCGUCGGcGCgcagauGCGAGGg -3'
miRNA:   3'- gcagCCGGAGa---AGCAGCC-CG------CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 22867 0.66 0.75083
Target:  5'- aCG-CGGCCgugugcacggCUUCGUCGcGGCuGaUGAGGu -3'
miRNA:   3'- -GCaGCCGGa---------GAAGCAGC-CCG-C-GCUCC- -5'
6589 5' -59.6 NC_001847.1 + 23770 0.68 0.683859
Target:  5'- -cUUGGCCag--CGgaugccCGGGCGCGAGGu -3'
miRNA:   3'- gcAGCCGGagaaGCa-----GCCCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 27431 0.7 0.536927
Target:  5'- gGUCGGUgUCgUUCG-CaGcGGCGCGGGGg -3'
miRNA:   3'- gCAGCCGgAG-AAGCaG-C-CCGCGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 28126 0.66 0.795917
Target:  5'- ---aGGCCggCgaCGUUGGGCcCGAGGa -3'
miRNA:   3'- gcagCCGGa-GaaGCAGCCCGcGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 28540 0.68 0.653412
Target:  5'- --cCGGCCgcgugcgCUUCGgcggcgCGGGCgacacccGCGAGGg -3'
miRNA:   3'- gcaGCCGGa------GAAGCa-----GCCCG-------CGCUCC- -5'
6589 5' -59.6 NC_001847.1 + 29696 0.67 0.732057
Target:  5'- --aUGGCgCUgaUCGcUUGGGCGCGAGa -3'
miRNA:   3'- gcaGCCG-GAgaAGC-AGCCCGCGCUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.