miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6598 5' -57.7 NC_001847.1 + 62597 0.66 0.80913
Target:  5'- cGGGCAggcaaaGAGCGCGUgcacgGGCgCCGgGUa -3'
miRNA:   3'- cCCCGUaa----CUCGCGCA-----CCG-GGUgUAa -5'
6598 5' -57.7 NC_001847.1 + 87846 0.66 0.80913
Target:  5'- -cGGC---GGGCGUGaUGGCCCGCGg- -3'
miRNA:   3'- ccCCGuaaCUCGCGC-ACCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 22204 0.66 0.800165
Target:  5'- uGGGCcgUGcugaAGCGCGUG-CCCAUc-- -3'
miRNA:   3'- cCCCGuaAC----UCGCGCACcGGGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 89578 0.66 0.800165
Target:  5'- aGGGCGUgGAGCGCGacGCCgcCGCGg- -3'
miRNA:   3'- cCCCGUAaCUCGCGCacCGG--GUGUaa -5'
6598 5' -57.7 NC_001847.1 + 66643 0.66 0.800165
Target:  5'- gGGGGCGcguUUGuggacugccuGGCGCGcuUGcGCCCGCGc- -3'
miRNA:   3'- -CCCCGU---AAC----------UCGCGC--AC-CGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 44718 0.66 0.791046
Target:  5'- aGGGUAgcgggaaGGGCGCcgccucGUGGCCCGCc-- -3'
miRNA:   3'- cCCCGUaa-----CUCGCG------CACCGGGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 125301 0.66 0.791046
Target:  5'- uGGGGCAagGcuGGC-CGUGGCUCAUg-- -3'
miRNA:   3'- -CCCCGUaaC--UCGcGCACCGGGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 22488 0.66 0.791046
Target:  5'- uGGGGCAagGcuGGC-CGUGGCUCAUg-- -3'
miRNA:   3'- -CCCCGUaaC--UCGcGCACCGGGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 6849 0.66 0.790126
Target:  5'- uGGGGgGggGGGCgGCGcuugcuuUGGCCCGCc-- -3'
miRNA:   3'- -CCCCgUaaCUCG-CGC-------ACCGGGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 109662 0.66 0.790126
Target:  5'- uGGGGgGggGGGCgGCGcuugcuuUGGCCCGCc-- -3'
miRNA:   3'- -CCCCgUaaCUCG-CGC-------ACCGGGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 133322 0.66 0.781781
Target:  5'- cGGGCGcgccggacgUGAGCGCGcucGGCgCGCAg- -3'
miRNA:   3'- cCCCGUa--------ACUCGCGCa--CCGgGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 32656 0.66 0.781781
Target:  5'- aGGGCGaggUGgacggcgccggcGGCGCG-GGCCCGCu-- -3'
miRNA:   3'- cCCCGUa--AC------------UCGCGCaCCGGGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 43139 0.66 0.781781
Target:  5'- cGGGCccgcGGGCGC-UGcGCCCGCAg- -3'
miRNA:   3'- cCCCGuaa-CUCGCGcAC-CGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 125196 0.66 0.781781
Target:  5'- cGGGGCAgaaGGCGCccGGgCCGCGg- -3'
miRNA:   3'- -CCCCGUaacUCGCGcaCCgGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 22383 0.66 0.781781
Target:  5'- cGGGGCAgaaGGCGCccGGgCCGCGg- -3'
miRNA:   3'- -CCCCGUaacUCGCGcaCCgGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 91571 0.66 0.781781
Target:  5'- uGGGGC-----GCGCGUcGCCCGCGg- -3'
miRNA:   3'- -CCCCGuaacuCGCGCAcCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 30509 0.66 0.781781
Target:  5'- cGGGCGcgccggacgUGAGCGCGcucGGCgCGCAg- -3'
miRNA:   3'- cCCCGUa--------ACUCGCGCa--CCGgGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 125247 0.66 0.781781
Target:  5'- cGGcGGCcacGAGCGCGacGGCCuCGCAa- -3'
miRNA:   3'- -CC-CCGuaaCUCGCGCa-CCGG-GUGUaa -5'
6598 5' -57.7 NC_001847.1 + 37063 0.66 0.778974
Target:  5'- gGGGGCggcuggugcacgcgGUacuggcccgccUGAGCGCGgagagcGGCCCGCu-- -3'
miRNA:   3'- -CCCCG--------------UA-----------ACUCGCGCa-----CCGGGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 32138 0.66 0.762848
Target:  5'- gGGGGCGggggcggGGGCGgG-GGCCC-CGg- -3'
miRNA:   3'- -CCCCGUaa-----CUCGCgCaCCGGGuGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.