Results 1 - 20 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6613 | 5' | -60 | NC_001847.1 | + | 59718 | 0.66 | 0.72308 |
Target: 5'- cCGcGGUCgcgauCGCGCUCGgCGuCCGGc -3' miRNA: 3'- uGCaCCAGau---GCGCGAGCgGC-GGCUu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 113936 | 0.66 | 0.68351 |
Target: 5'- cGCGcGGUCgcgGCgGCGUcuccuaCGCCGCCGGg -3' miRNA: 3'- -UGCaCCAGa--UG-CGCGa-----GCGGCGGCUu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 100357 | 0.66 | 0.68351 |
Target: 5'- cGCG-GGUCguagccGCGCGC-CGCgGCCGc- -3' miRNA: 3'- -UGCaCCAGa-----UGCGCGaGCGgCGGCuu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 53694 | 0.66 | 0.68351 |
Target: 5'- gAUGUGc---GCGCGCgagcgCGCCGCCGGc -3' miRNA: 3'- -UGCACcagaUGCGCGa----GCGGCGGCUu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 80808 | 0.66 | 0.68351 |
Target: 5'- uGCGcUGGUCcggGCGCGUgaggCGCCggauagcgagGCCGAc -3' miRNA: 3'- -UGC-ACCAGa--UGCGCGa---GCGG----------CGGCUu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 30781 | 0.66 | 0.673493 |
Target: 5'- cGCGc-GUCUGCGgGCgcggaCGCCGCCGc- -3' miRNA: 3'- -UGCacCAGAUGCgCGa----GCGGCGGCuu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 41350 | 0.66 | 0.68351 |
Target: 5'- cUGUGaccgC-ACGCGCUUGCgCGCCGAGa -3' miRNA: 3'- uGCACca--GaUGCGCGAGCG-GCGGCUU- -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 78046 | 0.66 | 0.68351 |
Target: 5'- ---aGGUCU-CGCGCUCGCC-CCu-- -3' miRNA: 3'- ugcaCCAGAuGCGCGAGCGGcGGcuu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 43007 | 0.66 | 0.693486 |
Target: 5'- cCGgGGgg-GCGCGCcggGCCGCCGAAa -3' miRNA: 3'- uGCaCCagaUGCGCGag-CGGCGGCUU- -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 106216 | 0.66 | 0.693486 |
Target: 5'- gGCuUGGUCUGgcgugGCGCUCGCCuGCaCGGc -3' miRNA: 3'- -UGcACCAGAUg----CGCGAGCGG-CG-GCUu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 57160 | 0.66 | 0.693486 |
Target: 5'- ---aGG---GCGCGCUCGCCGCCc-- -3' miRNA: 3'- ugcaCCagaUGCGCGAGCGGCGGcuu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 102602 | 0.66 | 0.693486 |
Target: 5'- aGCGccgagGG-CUGCGCGCgcaUCGCCuCCGAc -3' miRNA: 3'- -UGCa----CCaGAUGCGCG---AGCGGcGGCUu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 131761 | 0.66 | 0.72308 |
Target: 5'- uGCGgagGGcUUUGCGCgGCUCGgCGCgCGGAu -3' miRNA: 3'- -UGCa--CC-AGAUGCG-CGAGCgGCG-GCUU- -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 99247 | 0.66 | 0.72308 |
Target: 5'- cGCGccGUCccACGcCGC-CGCCGCCGAc -3' miRNA: 3'- -UGCacCAGa-UGC-GCGaGCGGCGGCUu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 99191 | 0.66 | 0.72308 |
Target: 5'- uCGUGGUCcuCGCGCgaggCGgCCGCgCGGc -3' miRNA: 3'- uGCACCAGauGCGCGa---GC-GGCG-GCUu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 16078 | 0.66 | 0.72308 |
Target: 5'- cCGUGGcguUgUACGCGCgCGCgUGCCGGc -3' miRNA: 3'- uGCACC---AgAUGCGCGaGCG-GCGGCUu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 27686 | 0.66 | 0.72308 |
Target: 5'- cGCGUcGGgCUgagGCGCGCgagCGCCGgCGGg -3' miRNA: 3'- -UGCA-CCaGA---UGCGCGa--GCGGCgGCUu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 16137 | 0.66 | 0.717208 |
Target: 5'- uGCG-GGUCUGCGaucaGCgccagcaugucgcaCGCCGCCGc- -3' miRNA: 3'- -UGCaCCAGAUGCg---CGa-------------GCGGCGGCuu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 81282 | 0.66 | 0.71328 |
Target: 5'- cGCGgcGGUCgGCGcCGCcagCGCCGCCa-- -3' miRNA: 3'- -UGCa-CCAGaUGC-GCGa--GCGGCGGcuu -5' |
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6613 | 5' | -60 | NC_001847.1 | + | 31826 | 0.66 | 0.703412 |
Target: 5'- cGCGgacaggggGGUUgGCGCGCggccgcccCGCCGCCGc- -3' miRNA: 3'- -UGCa-------CCAGaUGCGCGa-------GCGGCGGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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