miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6613 5' -60 NC_001847.1 + 79632 1.05 0.001914
Target:  5'- gACGUGGUCUACGCGCUCGCCGCCGAAc -3'
miRNA:   3'- -UGCACCAGAUGCGCGAGCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 84147 0.8 0.119745
Target:  5'- gGCGUGGUCcguaaucGCGCGCUcgagcugCGCCGCCGAc -3'
miRNA:   3'- -UGCACCAGa------UGCGCGA-------GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 69062 0.76 0.203603
Target:  5'- gACGUGGacuuUCUaACGCGCUCGCCGCg--- -3'
miRNA:   3'- -UGCACC----AGA-UGCGCGAGCGGCGgcuu -5'
6613 5' -60 NC_001847.1 + 77064 0.76 0.219019
Target:  5'- uGC-UGGUaCUccgGCgGCGCUCGCCGCCGAAg -3'
miRNA:   3'- -UGcACCA-GA---UG-CGCGAGCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 31756 0.75 0.229843
Target:  5'- cGCGUGGUCaGCGUGCacccgCGCgCGCCGGc -3'
miRNA:   3'- -UGCACCAGaUGCGCGa----GCG-GCGGCUu -5'
6613 5' -60 NC_001847.1 + 43558 0.74 0.258881
Target:  5'- cCGcGGUUUGCGCGCuUCGCCGCgGGc -3'
miRNA:   3'- uGCaCCAGAUGCGCG-AGCGGCGgCUu -5'
6613 5' -60 NC_001847.1 + 28511 0.74 0.290848
Target:  5'- gGCGUGGcccggCaGCGCGC-CGCCGCCGc- -3'
miRNA:   3'- -UGCACCa----GaUGCGCGaGCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 131324 0.74 0.290848
Target:  5'- gGCGUGGcccggCaGCGCGC-CGCCGCCGc- -3'
miRNA:   3'- -UGCACCa----GaUGCGCGaGCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 121110 0.74 0.290848
Target:  5'- cGCGacGGUaaaCUGCGCGCUgCGCCGCCGc- -3'
miRNA:   3'- -UGCa-CCA---GAUGCGCGA-GCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 131202 0.73 0.2976
Target:  5'- cUGUGGgu--CGCGCUCGCCGCCc-- -3'
miRNA:   3'- uGCACCagauGCGCGAGCGGCGGcuu -5'
6613 5' -60 NC_001847.1 + 14624 0.73 0.2976
Target:  5'- cACGUGGUUUucgaccGCgGCGCUCGCgCGCCGc- -3'
miRNA:   3'- -UGCACCAGA------UG-CGCGAGCG-GCGGCuu -5'
6613 5' -60 NC_001847.1 + 69131 0.73 0.325824
Target:  5'- uACGUGGUCuUugGCGCggCGuCCGCCu-- -3'
miRNA:   3'- -UGCACCAG-AugCGCGa-GC-GGCGGcuu -5'
6613 5' -60 NC_001847.1 + 78651 0.72 0.348265
Target:  5'- gGCGcGGUC-GCGCGCgccugCGUCGCCGGc -3'
miRNA:   3'- -UGCaCCAGaUGCGCGa----GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 98730 0.72 0.355987
Target:  5'- cGCGUcgcagGGUCUGCGCGCgagugcacCGUCGCCGc- -3'
miRNA:   3'- -UGCA-----CCAGAUGCGCGa-------GCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 119675 0.72 0.363828
Target:  5'- aGCGc-GUCUGCGCGCcgugCGCCGCCa-- -3'
miRNA:   3'- -UGCacCAGAUGCGCGa---GCGGCGGcuu -5'
6613 5' -60 NC_001847.1 + 133976 0.72 0.371788
Target:  5'- -gGUGGccuUCUGCGCgGCcgCGCUGCCGGAg -3'
miRNA:   3'- ugCACC---AGAUGCG-CGa-GCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 31163 0.72 0.371788
Target:  5'- -gGUGGccuUCUGCGCgGCcgCGCUGCCGGAg -3'
miRNA:   3'- ugCACC---AGAUGCG-CGa-GCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 99651 0.72 0.379866
Target:  5'- cCGUGGcCUcCGCGCgCGCCGCCu-- -3'
miRNA:   3'- uGCACCaGAuGCGCGaGCGGCGGcuu -5'
6613 5' -60 NC_001847.1 + 99450 0.71 0.38806
Target:  5'- aGCGUGGgagUUGCGCaGCgCGCCGCuCGGGg -3'
miRNA:   3'- -UGCACCa--GAUGCG-CGaGCGGCG-GCUU- -5'
6613 5' -60 NC_001847.1 + 63319 0.71 0.38806
Target:  5'- cGCGUGGUUcaGCGCggcgugcuccuGCUCGCCGCCc-- -3'
miRNA:   3'- -UGCACCAGa-UGCG-----------CGAGCGGCGGcuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.