miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6613 5' -60 NC_001847.1 + 2957 0.69 0.523566
Target:  5'- cGCGgcGGcCgccucgGCGCGCagCGCCGCCGGGg -3'
miRNA:   3'- -UGCa-CCaGa-----UGCGCGa-GCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 7351 0.66 0.693486
Target:  5'- -gGUGGUagccgucaGCGCGCUgcugccggCGCCGCUGAc -3'
miRNA:   3'- ugCACCAga------UGCGCGA--------GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 9894 0.67 0.612982
Target:  5'- uGCGaGGccguCGCGCUCgugGCCGCCGAGu -3'
miRNA:   3'- -UGCaCCagauGCGCGAG---CGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 9906 0.69 0.501449
Target:  5'- cGCGUGGUCUcgggccccgcccccGCGgacgagcaCGCUCGCCGCgGc- -3'
miRNA:   3'- -UGCACCAGA--------------UGC--------GCGAGCGGCGgCuu -5'
6613 5' -60 NC_001847.1 + 10182 0.69 0.5333
Target:  5'- uGCGccGGcuUUUGCGCGC-CGCCGCCGc- -3'
miRNA:   3'- -UGCa-CC--AGAUGCGCGaGCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 12044 0.67 0.623076
Target:  5'- aGCGcUGGacgccCUGCGCGCUgCGgaCGCCGAGg -3'
miRNA:   3'- -UGC-ACCa----GAUGCGCGA-GCg-GCGGCUU- -5'
6613 5' -60 NC_001847.1 + 14624 0.73 0.2976
Target:  5'- cACGUGGUUUucgaccGCgGCGCUCGCgCGCCGc- -3'
miRNA:   3'- -UGCACCAGA------UG-CGCGAGCG-GCGGCuu -5'
6613 5' -60 NC_001847.1 + 16078 0.66 0.72308
Target:  5'- cCGUGGcguUgUACGCGCgCGCgUGCCGGc -3'
miRNA:   3'- uGCACC---AgAUGCGCGaGCG-GCGGCUu -5'
6613 5' -60 NC_001847.1 + 16137 0.66 0.717208
Target:  5'- uGCG-GGUCUGCGaucaGCgccagcaugucgcaCGCCGCCGc- -3'
miRNA:   3'- -UGCaCCAGAUGCg---CGa-------------GCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 16616 0.71 0.413329
Target:  5'- uGCGUGGUCUuuggggggggGCGCGgcggcUUUGCCGUCGGGg -3'
miRNA:   3'- -UGCACCAGA----------UGCGC-----GAGCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 19899 0.66 0.72308
Target:  5'- cGCGaGGUagaaGCGCacgagggcgUCGCCGCCGAc -3'
miRNA:   3'- -UGCaCCAgaugCGCG---------AGCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 21870 0.67 0.653368
Target:  5'- uGCGgGGgCUGCG-GCgCGCUGCCGAGg -3'
miRNA:   3'- -UGCaCCaGAUGCgCGaGCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 22089 0.66 0.72308
Target:  5'- gACGUGcGcCgACGCGCUgcggcUGCUGCCGGc -3'
miRNA:   3'- -UGCAC-CaGaUGCGCGA-----GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 23450 0.68 0.582812
Target:  5'- cGCGUgagGGUCgcCGCGUcCGCCGCCu-- -3'
miRNA:   3'- -UGCA---CCAGauGCGCGaGCGGCGGcuu -5'
6613 5' -60 NC_001847.1 + 24238 0.67 0.643276
Target:  5'- cACGUgGGUCgGCGC-CUCGCCGUggUGGAc -3'
miRNA:   3'- -UGCA-CCAGaUGCGcGAGCGGCG--GCUU- -5'
6613 5' -60 NC_001847.1 + 27686 0.66 0.72308
Target:  5'- cGCGUcGGgCUgagGCGCGCgagCGCCGgCGGg -3'
miRNA:   3'- -UGCA-CCaGA---UGCGCGa--GCGGCgGCUu -5'
6613 5' -60 NC_001847.1 + 28355 0.69 0.523566
Target:  5'- cGCGcccgGGcCcccgGCGCcCUCGCCGCCGGAg -3'
miRNA:   3'- -UGCa---CCaGa---UGCGcGAGCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 28437 0.69 0.5333
Target:  5'- cGCGcUGG-CUACGcCGCggCGCCGCgCGAc -3'
miRNA:   3'- -UGC-ACCaGAUGC-GCGa-GCGGCG-GCUu -5'
6613 5' -60 NC_001847.1 + 28511 0.74 0.290848
Target:  5'- gGCGUGGcccggCaGCGCGC-CGCCGCCGc- -3'
miRNA:   3'- -UGCACCa----GaUGCGCGaGCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 28643 0.7 0.447649
Target:  5'- cGCG-GGUgaggcuaacgcuuUUGCGCGCUCGUCGCaCGAc -3'
miRNA:   3'- -UGCaCCA-------------GAUGCGCGAGCGGCG-GCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.