miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6613 5' -60 NC_001847.1 + 79632 1.05 0.001914
Target:  5'- gACGUGGUCUACGCGCUCGCCGCCGAAc -3'
miRNA:   3'- -UGCACCAGAUGCGCGAGCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 94431 0.69 0.494799
Target:  5'- uCGUGGUCUGCGUggGUUCGCCcacgcagaCCGAc -3'
miRNA:   3'- uGCACCAGAUGCG--CGAGCGGc-------GGCUu -5'
6613 5' -60 NC_001847.1 + 112719 0.69 0.501449
Target:  5'- cGCGUGGUCUcgggccccgcccccGCGgacgagcaCGCUCGCCGCgGc- -3'
miRNA:   3'- -UGCACCAGA--------------UGC--------GCGAGCGGCGgCuu -5'
6613 5' -60 NC_001847.1 + 22089 0.66 0.72308
Target:  5'- gACGUGcGcCgACGCGCUgcggcUGCUGCCGGc -3'
miRNA:   3'- -UGCAC-CaGaUGCGCGA-----GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 131324 0.74 0.290848
Target:  5'- gGCGUGGcccggCaGCGCGC-CGCCGCCGc- -3'
miRNA:   3'- -UGCACCa----GaUGCGCGaGCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 121110 0.74 0.290848
Target:  5'- cGCGacGGUaaaCUGCGCGCUgCGCCGCCGc- -3'
miRNA:   3'- -UGCa-CCA---GAUGCGCGA-GCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 78651 0.72 0.348265
Target:  5'- gGCGcGGUC-GCGCGCgccugCGUCGCCGGc -3'
miRNA:   3'- -UGCaCCAGaUGCGCGa----GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 133976 0.72 0.371788
Target:  5'- -gGUGGccuUCUGCGCgGCcgCGCUGCCGGAg -3'
miRNA:   3'- ugCACC---AGAUGCG-CGa-GCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 40175 0.71 0.421975
Target:  5'- cGCGgGGgCUGCGCGCggcggaacgGCCGCCGAu -3'
miRNA:   3'- -UGCaCCaGAUGCGCGag-------CGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 33045 0.7 0.485369
Target:  5'- aGC-UGG---ACGCGCUCGCgGCCGAGg -3'
miRNA:   3'- -UGcACCagaUGCGCGAGCGgCGGCUU- -5'
6613 5' -60 NC_001847.1 + 74129 0.7 0.457612
Target:  5'- cCGUGGUgCUGCGCGUggCGCCGgggCGAAu -3'
miRNA:   3'- uGCACCA-GAUGCGCGa-GCGGCg--GCUU- -5'
6613 5' -60 NC_001847.1 + 16616 0.71 0.413329
Target:  5'- uGCGUGGUCUuuggggggggGCGCGgcggcUUUGCCGUCGGGg -3'
miRNA:   3'- -UGCACCAGA----------UGCGC-----GAGCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 69062 0.76 0.203603
Target:  5'- gACGUGGacuuUCUaACGCGCUCGCCGCg--- -3'
miRNA:   3'- -UGCACC----AGA-UGCGCGAGCGGCGgcuu -5'
6613 5' -60 NC_001847.1 + 33009 0.7 0.466772
Target:  5'- cCGUGGUC-GCGCGgagUGCCGCCGc- -3'
miRNA:   3'- uGCACCAGaUGCGCga-GCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 31756 0.75 0.229843
Target:  5'- cGCGUGGUCaGCGUGCacccgCGCgCGCCGGc -3'
miRNA:   3'- -UGCACCAGaUGCGCGa----GCG-GCGGCUu -5'
6613 5' -60 NC_001847.1 + 99450 0.71 0.38806
Target:  5'- aGCGUGGgagUUGCGCaGCgCGCCGCuCGGGg -3'
miRNA:   3'- -UGCACCa--GAUGCG-CGaGCGGCG-GCUU- -5'
6613 5' -60 NC_001847.1 + 80029 0.7 0.476025
Target:  5'- cGCGgggggGGUCgGCGUcaucGC-CGCCGCCGAGg -3'
miRNA:   3'- -UGCa----CCAGaUGCG----CGaGCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 63271 0.69 0.494799
Target:  5'- aACG-GG-CcGCGCGCUCGCgGCCGc- -3'
miRNA:   3'- -UGCaCCaGaUGCGCGAGCGgCGGCuu -5'
6613 5' -60 NC_001847.1 + 43558 0.74 0.258881
Target:  5'- cCGcGGUUUGCGCGCuUCGCCGCgGGc -3'
miRNA:   3'- uGCaCCAGAUGCGCG-AGCGGCGgCUu -5'
6613 5' -60 NC_001847.1 + 69131 0.73 0.325824
Target:  5'- uACGUGGUCuUugGCGCggCGuCCGCCu-- -3'
miRNA:   3'- -UGCACCAG-AugCGCGa-GC-GGCGGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.