miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 3' -55.3 NC_001847.1 + 14446 0.7 0.733321
Target:  5'- cGGcGCCGGGgugcGCGGCCgCGGCCUcUGg-- -3'
miRNA:   3'- -CC-UGGCCC----UGCUGG-GCCGGAaAUaug -5'
6617 3' -55.3 NC_001847.1 + 14864 0.66 0.929628
Target:  5'- cGGCCGGG-CGACCCcauGGUCg------ -3'
miRNA:   3'- cCUGGCCCuGCUGGG---CCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 15405 0.67 0.887336
Target:  5'- gGGGCCGGGuuuCGGCUCGcCCUcg--GCg -3'
miRNA:   3'- -CCUGGCCCu--GCUGGGCcGGAaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 16159 0.72 0.610618
Target:  5'- aGGCCGGGGCGACCgccccguUGGCCg------ -3'
miRNA:   3'- cCUGGCCCUGCUGG-------GCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 16458 0.73 0.550721
Target:  5'- -aGCCGGGgcuGCGGCCCGGCCc------ -3'
miRNA:   3'- ccUGGCCC---UGCUGGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 19623 0.67 0.86576
Target:  5'- cGGGcCCGGGGCGccggcgucggcGCgCGGCCgcu-UGCg -3'
miRNA:   3'- -CCU-GGCCCUGC-----------UGgGCCGGaaauAUG- -5'
6617 3' -55.3 NC_001847.1 + 20081 0.67 0.887336
Target:  5'- cGGcucCCGcGGcGCGGCCCGGCCa------ -3'
miRNA:   3'- -CCu--GGC-CC-UGCUGGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 21730 0.69 0.781169
Target:  5'- aGGGCgCGGGcCGGCgCCGGCCcgcgcGCg -3'
miRNA:   3'- -CCUG-GCCCuGCUG-GGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 21772 0.68 0.825666
Target:  5'- cGGcGCCGGGccCGGCgCCGGCCgg---GCg -3'
miRNA:   3'- -CC-UGGCCCu-GCUG-GGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 23067 0.66 0.929628
Target:  5'- uGGGCUgGGGugGGCUgGGCUgggGUGg -3'
miRNA:   3'- -CCUGG-CCCugCUGGgCCGGaaaUAUg -5'
6617 3' -55.3 NC_001847.1 + 23097 0.66 0.929628
Target:  5'- uGGGCUgGGGugGGCUgGGCUgggGUGg -3'
miRNA:   3'- -CCUGG-CCCugCUGGgCCGGaaaUAUg -5'
6617 3' -55.3 NC_001847.1 + 24743 0.67 0.87317
Target:  5'- aGGCCGGGcCGugCagcCGGCUgagGUGCg -3'
miRNA:   3'- cCUGGCCCuGCugG---GCCGGaaaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 26524 0.7 0.743104
Target:  5'- gGGGCCGGGGgcguuCGGCCauGCUUUcAUGCa -3'
miRNA:   3'- -CCUGGCCCU-----GCUGGgcCGGAAaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 26644 0.67 0.900596
Target:  5'- -uGCCGGGucuggGCGGCCCcGGCCg------ -3'
miRNA:   3'- ccUGGCCC-----UGCUGGG-CCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 27632 0.67 0.900596
Target:  5'- cGGACCucggcccgacggGGGGCucggaggaaGACCCGGCCc---UGCu -3'
miRNA:   3'- -CCUGG------------CCCUG---------CUGGGCCGGaaauAUG- -5'
6617 3' -55.3 NC_001847.1 + 27871 0.67 0.879654
Target:  5'- uGGGCCGcgcucgagcgguuGGAuggcgaggucgcCGGCCCGGCCgcgcuUGCg -3'
miRNA:   3'- -CCUGGC-------------CCU------------GCUGGGCCGGaaau-AUG- -5'
6617 3' -55.3 NC_001847.1 + 27991 0.7 0.743104
Target:  5'- cGGCCGGGGCGgaggcgGCCgCGGCCg------ -3'
miRNA:   3'- cCUGGCCCUGC------UGG-GCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 29232 0.68 0.842286
Target:  5'- cGGGCCGcGGccugcCGGCCgCGGCCUgc--GCg -3'
miRNA:   3'- -CCUGGC-CCu----GCUGG-GCCGGAaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 29502 0.66 0.929628
Target:  5'- cGGCCGcGGGCGGCgcuUCGGCCg------ -3'
miRNA:   3'- cCUGGC-CCUGCUG---GGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 29577 0.67 0.87317
Target:  5'- -uGCCGGcugccgucuugcGA-GACCCGGCCUUUGcGCc -3'
miRNA:   3'- ccUGGCC------------CUgCUGGGCCGGAAAUaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.