miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6632 3' -65.5 NC_001847.1 + 62450 0.65 0.480939
Target:  5'- cGGGCGGcCGCUCUcccCGGCCUcagcagggccggggUCGCCGg -3'
miRNA:   3'- -CUUGCC-GCGGGAcc-GCCGGG--------------AGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 130259 0.66 0.431214
Target:  5'- cAGCGGCGC---GGgGGCCCU-GCCGc -3'
miRNA:   3'- cUUGCCGCGggaCCgCCGGGAgCGGC- -5'
6632 3' -65.5 NC_001847.1 + 96858 0.66 0.448325
Target:  5'- gGGGCGGCGgUgggcGGCGGUCCgCGCUGg -3'
miRNA:   3'- -CUUGCCGCgGga--CCGCCGGGaGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 105516 0.66 0.439722
Target:  5'- -cGCGGCGCCC---CGGCCCUCauGUCc -3'
miRNA:   3'- cuUGCCGCGGGaccGCCGGGAG--CGGc -5'
6632 3' -65.5 NC_001847.1 + 82580 0.66 0.448325
Target:  5'- gGAGCGcgugcgcgaaGCGCUCgcGGCGGCgCCUgugCGCCGc -3'
miRNA:   3'- -CUUGC----------CGCGGGa-CCGCCG-GGA---GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 76836 0.66 0.438867
Target:  5'- -cGCGGCGCcauccggCCUGcCGGCCgC-CGCCGu -3'
miRNA:   3'- cuUGCCGCG-------GGACcGCCGG-GaGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 127943 0.66 0.439722
Target:  5'- cGGGCGGCGgCCgcGGCuGCCUaaaGCCGa -3'
miRNA:   3'- -CUUGCCGCgGGa-CCGcCGGGag-CGGC- -5'
6632 3' -65.5 NC_001847.1 + 103167 0.66 0.439722
Target:  5'- cGGGCuucGCGCCCcGG-GGCCCgccccgcgCGCCGc -3'
miRNA:   3'- -CUUGc--CGCGGGaCCgCCGGGa-------GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 117469 0.66 0.431214
Target:  5'- --gUGGUGCCC-GGCGGaCCgcgagcCGCCGa -3'
miRNA:   3'- cuuGCCGCGGGaCCGCCgGGa-----GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 130599 0.66 0.439722
Target:  5'- cGACGGCGCCggagacgcGGgGGCCaccgagggCGCCGa -3'
miRNA:   3'- cUUGCCGCGGga------CCgCCGGga------GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 115292 0.66 0.439722
Target:  5'- --cCGGCGCCCccgGGCgcgGGCCaagggCGCUGu -3'
miRNA:   3'- cuuGCCGCGGGa--CCG---CCGGga---GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 52461 0.66 0.439722
Target:  5'- ---gGGCgGCCCUGGUGGaggacgaguUCUUCGCCc -3'
miRNA:   3'- cuugCCG-CGGGACCGCC---------GGGAGCGGc -5'
6632 3' -65.5 NC_001847.1 + 83579 0.66 0.448325
Target:  5'- --cCGGCGCCgcggaagcgCUGGCGaGCUg-CGCCGa -3'
miRNA:   3'- cuuGCCGCGG---------GACCGC-CGGgaGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 15987 0.66 0.439722
Target:  5'- --cCGcCGCCCcgcGGCGGCCgCggCGCCGa -3'
miRNA:   3'- cuuGCcGCGGGa--CCGCCGG-Ga-GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 18952 0.66 0.431214
Target:  5'- -cGCGGCGUCCgGGCGGCgacgaCCagCGCgGc -3'
miRNA:   3'- cuUGCCGCGGGaCCGCCG-----GGa-GCGgC- -5'
6632 3' -65.5 NC_001847.1 + 121724 0.66 0.447461
Target:  5'- -cACGGCGCgCgCUGGCGcGCCCgucuuucUC-CCGg -3'
miRNA:   3'- cuUGCCGCG-G-GACCGC-CGGG-------AGcGGC- -5'
6632 3' -65.5 NC_001847.1 + 38125 0.66 0.439722
Target:  5'- aGGACGcGCuGCCCcccGCGGCCagCGCCGc -3'
miRNA:   3'- -CUUGC-CG-CGGGac-CGCCGGgaGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 132216 0.66 0.445735
Target:  5'- aGGCGGcCGCgCUGGCGGCgCggaccguggccccgCUCGCgCGg -3'
miRNA:   3'- cUUGCC-GCGgGACCGCCG-G--------------GAGCG-GC- -5'
6632 3' -65.5 NC_001847.1 + 54419 0.66 0.439722
Target:  5'- -cGCGGUugGCCUcGGCGGCCCggGCa- -3'
miRNA:   3'- cuUGCCG--CGGGaCCGCCGGGagCGgc -5'
6632 3' -65.5 NC_001847.1 + 55271 0.66 0.439722
Target:  5'- cGAACGGCgccggGCCCggacgGGCGGCagUCGUg- -3'
miRNA:   3'- -CUUGCCG-----CGGGa----CCGCCGggAGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.