miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6632 3' -65.5 NC_001847.1 + 113 0.68 0.351764
Target:  5'- --cCGGCGCCCcGcGCcccGGCCC-CGCCc -3'
miRNA:   3'- cuuGCCGCGGGaC-CG---CCGGGaGCGGc -5'
6632 3' -65.5 NC_001847.1 + 215 0.7 0.247479
Target:  5'- --cCGGCGCCC-GGgGGCCCgaGCCc -3'
miRNA:   3'- cuuGCCGCGGGaCCgCCGGGagCGGc -5'
6632 3' -65.5 NC_001847.1 + 257 0.7 0.269688
Target:  5'- --cCGGCGCCCaGG-GGCCCgagcccgggggcCGCCGa -3'
miRNA:   3'- cuuGCCGCGGGaCCgCCGGGa-----------GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 354 0.66 0.439722
Target:  5'- cGGGCuucGCGCCCcGG-GGCCCgccccgcgCGCCGc -3'
miRNA:   3'- -CUUGc--CGCGGGaCCgCCGGGa-------GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 488 0.7 0.277027
Target:  5'- cGGCGGCGgCggGGCGGCCgCgCGCCa -3'
miRNA:   3'- cUUGCCGCgGgaCCGCCGG-GaGCGGc -5'
6632 3' -65.5 NC_001847.1 + 583 0.68 0.3668
Target:  5'- --cCGGCGCCg-GGUccuGGCCCUCcgcgGCCGc -3'
miRNA:   3'- cuuGCCGCGGgaCCG---CCGGGAG----CGGC- -5'
6632 3' -65.5 NC_001847.1 + 618 0.67 0.40628
Target:  5'- cAGCGGCGC----GCGGCCCgCGCCu -3'
miRNA:   3'- cUUGCCGCGggacCGCCGGGaGCGGc -5'
6632 3' -65.5 NC_001847.1 + 874 0.67 0.414491
Target:  5'- -cACGcGCGgC--GGCGGCCCgCGCCGg -3'
miRNA:   3'- cuUGC-CGCgGgaCCGCCGGGaGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 1109 0.69 0.309324
Target:  5'- cGGGCGGCGCcgccgcggCCUccagcaccagcGGCGGCgCCUCGgCGc -3'
miRNA:   3'- -CUUGCCGCG--------GGA-----------CCGCCG-GGAGCgGC- -5'
6632 3' -65.5 NC_001847.1 + 1260 0.71 0.238591
Target:  5'- cAGCGGCGCgCCgagcccccagcgguUGGCGGCgcgguggcuggccgCCUCGCCc -3'
miRNA:   3'- cUUGCCGCG-GG--------------ACCGCCG--------------GGAGCGGc -5'
6632 3' -65.5 NC_001847.1 + 1341 0.7 0.264882
Target:  5'- cAGCGccGCGCCCUGcGCGGCCauguccuugCGCCc -3'
miRNA:   3'- cUUGC--CGCGGGAC-CGCCGGga-------GCGGc -5'
6632 3' -65.5 NC_001847.1 + 1928 0.68 0.327924
Target:  5'- -cGCGGCGCggcggccacucgggCCgccGGCGcucGUCCUCGCCGg -3'
miRNA:   3'- cuUGCCGCG--------------GGa--CCGC---CGGGAGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 2081 0.66 0.465806
Target:  5'- cGGCGaGCGCCCcGcGgGGCCCgcgCGgCGg -3'
miRNA:   3'- cUUGC-CGCGGGaC-CgCCGGGa--GCgGC- -5'
6632 3' -65.5 NC_001847.1 + 2306 0.69 0.296071
Target:  5'- aGACGGCuGCCCaUGGCGacacGCCCgcugCGCgGa -3'
miRNA:   3'- cUUGCCG-CGGG-ACCGC----CGGGa---GCGgC- -5'
6632 3' -65.5 NC_001847.1 + 2331 0.66 0.465806
Target:  5'- cGGGCGG-GCagcGGCGGCUCcCGCCGc -3'
miRNA:   3'- -CUUGCCgCGggaCCGCCGGGaGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 2423 0.69 0.314068
Target:  5'- cGAGgGGCcCCCcgcGGCGGCcggcagggccgccgCCUCGCCGu -3'
miRNA:   3'- -CUUgCCGcGGGa--CCGCCG--------------GGAGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 2540 0.7 0.242446
Target:  5'- cGGCGGCGCUCccgccgccgggccggGGCGGCCCUCuuCCu -3'
miRNA:   3'- cUUGCCGCGGGa--------------CCGCCGGGAGc-GGc -5'
6632 3' -65.5 NC_001847.1 + 2655 0.74 0.143639
Target:  5'- -uGCGGCGCCUUcgcccGGCGGCUCg-GCCGg -3'
miRNA:   3'- cuUGCCGCGGGA-----CCGCCGGGagCGGC- -5'
6632 3' -65.5 NC_001847.1 + 2703 0.66 0.439722
Target:  5'- -cGCGGCGCCC---CGGCCCUCauGUCc -3'
miRNA:   3'- cuUGCCGCGGGaccGCCGGGAG--CGGc -5'
6632 3' -65.5 NC_001847.1 + 2761 0.7 0.253173
Target:  5'- cGGCGGCGCC--GGCGccggcGCCCcCGCCGg -3'
miRNA:   3'- cUUGCCGCGGgaCCGC-----CGGGaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.