miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6632 3' -65.5 NC_001847.1 + 112785 0.74 0.143639
Target:  5'- aGGACuGGCGCCCcgaGGCGcuGCgCCUCGCCa -3'
miRNA:   3'- -CUUG-CCGCGGGa--CCGC--CG-GGAGCGGc -5'
6632 3' -65.5 NC_001847.1 + 53849 0.75 0.123686
Target:  5'- cGGCGGCGCUggcggcgCUGGCGGCgCCgacCGCCGc -3'
miRNA:   3'- cUUGCCGCGG-------GACCGCCG-GGa--GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 35686 0.75 0.123991
Target:  5'- aAGCGGCGCUgcugCUGGCGGCCgUggaggaggCGCCGg -3'
miRNA:   3'- cUUGCCGCGG----GACCGCCGGgA--------GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 111276 0.74 0.130246
Target:  5'- aGGCGGCGCCgggccgggGGCGGCgCUCgGCCGg -3'
miRNA:   3'- cUUGCCGCGGga------CCGCCGgGAG-CGGC- -5'
6632 3' -65.5 NC_001847.1 + 134856 0.74 0.134797
Target:  5'- gGGACGGCGCCCgcgcgggcucGGCGGCCCccgggcucgggccccUgggCGCCGg -3'
miRNA:   3'- -CUUGCCGCGGGa---------CCGCCGGG---------------A---GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 107287 0.74 0.136792
Target:  5'- --uCGGCGCCCcccgcgucccUGGCGccggcGUCCUCGCCGa -3'
miRNA:   3'- cuuGCCGCGGG----------ACCGC-----CGGGAGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 114808 0.74 0.136792
Target:  5'- uGGgGGUGCCCUGGCGGuacaugguCCCUCGgCGc -3'
miRNA:   3'- cUUgCCGCGGGACCGCC--------GGGAGCgGC- -5'
6632 3' -65.5 NC_001847.1 + 43259 0.74 0.139835
Target:  5'- -cGCGGCGCCCgGGgGGCaCCUgcugcgaCGCCGc -3'
miRNA:   3'- cuUGCCGCGGGaCCgCCG-GGA-------GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 2655 0.74 0.143639
Target:  5'- -uGCGGCGCCUUcgcccGGCGGCUCg-GCCGg -3'
miRNA:   3'- cuUGCCGCGGGA-----CCGCCGGGagCGGC- -5'
6632 3' -65.5 NC_001847.1 + 44814 0.75 0.123077
Target:  5'- uGGCGGCugcgcccccgGCCCcGGCGGCCCcaccgaacgcgcgcUCGCCGa -3'
miRNA:   3'- cUUGCCG----------CGGGaCCGCCGGG--------------AGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 11637 0.75 0.120969
Target:  5'- -cGCGGCaGCCCUGGCcccGGCCC-CGCUu -3'
miRNA:   3'- cuUGCCG-CGGGACCG---CCGGGaGCGGc -5'
6632 3' -65.5 NC_001847.1 + 133565 0.75 0.115129
Target:  5'- cGAGCGGCGCgCUGGCGcGCgCCgUGCUGg -3'
miRNA:   3'- -CUUGCCGCGgGACCGC-CG-GGaGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 112523 0.78 0.071443
Target:  5'- cGGAC-GCGCCCUGcGCGGCCaCUCGCUu -3'
miRNA:   3'- -CUUGcCGCGGGAC-CGCCGG-GAGCGGc -5'
6632 3' -65.5 NC_001847.1 + 11666 0.78 0.07328
Target:  5'- cGGCGGCcccagccgaGCCCgcGGCGGCCgUCGCCGg -3'
miRNA:   3'- cUUGCCG---------CGGGa-CCGCCGGgAGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 59066 0.77 0.083163
Target:  5'- aGGCGGCaGCUcggCUGGCGcGCCCUCGCCc -3'
miRNA:   3'- cUUGCCG-CGG---GACCGC-CGGGAGCGGc -5'
6632 3' -65.5 NC_001847.1 + 107344 0.77 0.091512
Target:  5'- --uCGGCGCCCUcGGUGGCCCccgcgucuccggCGCCGu -3'
miRNA:   3'- cuuGCCGCGGGA-CCGCCGGGa-----------GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 64060 0.77 0.091972
Target:  5'- --cUGGaCGCCCUGGcCGGCcgCCUCGCCGc -3'
miRNA:   3'- cuuGCC-GCGGGACC-GCCG--GGAGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 15746 0.76 0.094309
Target:  5'- uGGAgGGCGCCUaugccgacgcgGGCGGCCCgcuuUCGCCGg -3'
miRNA:   3'- -CUUgCCGCGGGa----------CCGCCGGG----AGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 35122 0.76 0.094309
Target:  5'- uGGAgGGCGaCCUGGCGGCCgugccucggCUCGCCa -3'
miRNA:   3'- -CUUgCCGCgGGACCGCCGG---------GAGCGGc -5'
6632 3' -65.5 NC_001847.1 + 75103 0.75 0.114844
Target:  5'- cGGCGGCGCCCcGGCgcuugcccgagaaGGCCCgggcccCGCCGg -3'
miRNA:   3'- cUUGCCGCGGGaCCG-------------CCGGGa-----GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.