Results 1 - 20 of 521 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6632 | 3' | -65.5 | NC_001847.1 | + | 90538 | 1.06 | 0.000565 |
Target: 5'- uGAACGGCGCCCUGGCGGCCCUCGCCGc -3' miRNA: 3'- -CUUGCCGCGGGACCGCCGGGAGCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 85163 | 0.81 | 0.040655 |
Target: 5'- -cACGGCGCCCUcGUGGCUCUCGUCGa -3' miRNA: 3'- cuUGCCGCGGGAcCGCCGGGAGCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 107691 | 0.8 | 0.05259 |
Target: 5'- uGACGGCGCCUgcgguUGGCGGCgCUCGCgGg -3' miRNA: 3'- cUUGCCGCGGG-----ACCGCCGgGAGCGgC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 98881 | 0.79 | 0.066195 |
Target: 5'- -cGCGuGCGCCUgGGCGGCCCagGCCGg -3' miRNA: 3'- cuUGC-CGCGGGaCCGCCGGGagCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 74141 | 0.78 | 0.069651 |
Target: 5'- -cGCGGCGCCgaUGGCGGCCUcgacggCGCCGu -3' miRNA: 3'- cuUGCCGCGGg-ACCGCCGGGa-----GCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 62921 | 0.78 | 0.069651 |
Target: 5'- --uCGGgGCCCgcgGGCGGCuCCUCGUCGg -3' miRNA: 3'- cuuGCCgCGGGa--CCGCCG-GGAGCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 9710 | 0.78 | 0.071443 |
Target: 5'- cGGAC-GCGCCCUGcGCGGCCaCUCGCUu -3' miRNA: 3'- -CUUGcCGCGGGAC-CGCCGG-GAGCGGc -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 112523 | 0.78 | 0.071443 |
Target: 5'- cGGAC-GCGCCCUGcGCGGCCaCUCGCUu -3' miRNA: 3'- -CUUGcCGCGGGAC-CGCCGG-GAGCGGc -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 11666 | 0.78 | 0.07328 |
Target: 5'- cGGCGGCcccagccgaGCCCgcGGCGGCCgUCGCCGg -3' miRNA: 3'- cUUGCCG---------CGGGa-CCGCCGGgAGCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 59066 | 0.77 | 0.083163 |
Target: 5'- aGGCGGCaGCUcggCUGGCGcGCCCUCGCCc -3' miRNA: 3'- cUUGCCG-CGG---GACCGC-CGGGAGCGGc -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 81083 | 0.77 | 0.085287 |
Target: 5'- cGACGGCGC--UGGCGGCggCCUCGCCGc -3' miRNA: 3'- cUUGCCGCGggACCGCCG--GGAGCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 107344 | 0.77 | 0.091512 |
Target: 5'- --uCGGCGCCCUcGGUGGCCCccgcgucuccggCGCCGu -3' miRNA: 3'- cuuGCCGCGGGA-CCGCCGGGa-----------GCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 4531 | 0.77 | 0.091512 |
Target: 5'- --uCGGCGCCCUcGGUGGCCCccgcgucuccggCGCCGu -3' miRNA: 3'- cuuGCCGCGGGA-CCGCCGGGa-----------GCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 64060 | 0.77 | 0.091972 |
Target: 5'- --cUGGaCGCCCUGGcCGGCcgCCUCGCCGc -3' miRNA: 3'- cuuGCC-GCGGGACC-GCCG--GGAGCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 35122 | 0.76 | 0.094309 |
Target: 5'- uGGAgGGCGaCCUGGCGGCCgugccucggCUCGCCa -3' miRNA: 3'- -CUUgCCGCgGGACCGCCGG---------GAGCGGc -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 15746 | 0.76 | 0.094309 |
Target: 5'- uGGAgGGCGCCUaugccgacgcgGGCGGCCCgcuuUCGCCGg -3' miRNA: 3'- -CUUgCCGCGGGa----------CCGCCGGG----AGCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 99182 | 0.76 | 0.101662 |
Target: 5'- --uUGGCGCCCUcGUGGUCCUCGCgCGa -3' miRNA: 3'- cuuGCCGCGGGAcCGCCGGGAGCG-GC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 34574 | 0.76 | 0.104231 |
Target: 5'- cGGCGGCaGCgCCUGGCGGCaauaaUCGCCGc -3' miRNA: 3'- cUUGCCG-CG-GGACCGCCGgg---AGCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 75103 | 0.75 | 0.114844 |
Target: 5'- cGGCGGCGCCCcGGCgcuugcccgagaaGGCCCgggcccCGCCGg -3' miRNA: 3'- cUUGCCGCGGGaCCG-------------CCGGGa-----GCGGC- -5' |
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6632 | 3' | -65.5 | NC_001847.1 | + | 133565 | 0.75 | 0.115129 |
Target: 5'- cGAGCGGCGCgCUGGCGcGCgCCgUGCUGg -3' miRNA: 3'- -CUUGCCGCGgGACCGC-CG-GGaGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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