miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6632 5' -53.1 NC_001847.1 + 125279 0.66 0.961137
Target:  5'- aGGCGGC-AgGAGCCGUCGcagGUGGGGc- -3'
miRNA:   3'- -CCGCUGcUgCUCGGCGGU---UAUCUUcu -5'
6632 5' -53.1 NC_001847.1 + 52953 0.66 0.961137
Target:  5'- aGGCcGCGGCGucuuuGGCCGUgAAgggggGGggGAa -3'
miRNA:   3'- -CCGcUGCUGC-----UCGGCGgUUa----UCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 18093 0.66 0.960052
Target:  5'- gGGCGAggcuuccgccuccuCGGCGAGCCcccGCCGGgcAGAcaGGAg -3'
miRNA:   3'- -CCGCU--------------GCUGCUCGG---CGGUUa-UCU--UCU- -5'
6632 5' -53.1 NC_001847.1 + 88570 0.66 0.964267
Target:  5'- cGCGcGCGGCGcgagagauguaacGGCCGCgCGGcUGGAGGAc -3'
miRNA:   3'- cCGC-UGCUGC-------------UCGGCG-GUU-AUCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 127944 0.66 0.961137
Target:  5'- gGGCGGCGGCcgcGGCUGCCuaaAGccGAa -3'
miRNA:   3'- -CCGCUGCUGc--UCGGCGGuuaUCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 7907 0.66 0.961137
Target:  5'- gGGCGcGCGGCG-GCCGCCGc------- -3'
miRNA:   3'- -CCGC-UGCUGCuCGGCGGUuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 77986 0.66 0.964604
Target:  5'- uGGCgGGCGGCGAGCgCGCCc-------- -3'
miRNA:   3'- -CCG-CUGCUGCUCG-GCGGuuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 20632 0.66 0.964604
Target:  5'- aGGCGuuuCGcaGCGAGgCGCCAA-AGggGc -3'
miRNA:   3'- -CCGCu--GC--UGCUCgGCGGUUaUCuuCu -5'
6632 5' -53.1 NC_001847.1 + 132809 0.66 0.961137
Target:  5'- cGCGGCGG-GAGCCGCCGc------- -3'
miRNA:   3'- cCGCUGCUgCUCGGCGGUuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 75799 0.66 0.960778
Target:  5'- cGCGGCGcGCGAccucgccGCCGCCAAUGa---- -3'
miRNA:   3'- cCGCUGC-UGCU-------CGGCGGUUAUcuucu -5'
6632 5' -53.1 NC_001847.1 + 104305 0.66 0.961137
Target:  5'- aGCGGCGGCgccucgggguaGAGCCGCgcGUAGgcGGc -3'
miRNA:   3'- cCGCUGCUG-----------CUCGGCGguUAUCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 124434 0.66 0.961137
Target:  5'- uGGCGGCGcuuggccggcGCGGGCCGCgcccgggcgCGAccGGAGGGc -3'
miRNA:   3'- -CCGCUGC----------UGCUCGGCG---------GUUa-UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 50874 0.66 0.964604
Target:  5'- gGGCGcCGACGAGaaCGCCA--GGAGc- -3'
miRNA:   3'- -CCGCuGCUGCUCg-GCGGUuaUCUUcu -5'
6632 5' -53.1 NC_001847.1 + 88844 0.66 0.964604
Target:  5'- cGGCGcuACGGCuGGCCGUaga-GGAAGAc -3'
miRNA:   3'- -CCGC--UGCUGcUCGGCGguuaUCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 32775 0.66 0.961137
Target:  5'- cGCGACGGCcGGCCGCU---GGAc-- -3'
miRNA:   3'- cCGCUGCUGcUCGGCGGuuaUCUucu -5'
6632 5' -53.1 NC_001847.1 + 48180 0.66 0.961137
Target:  5'- cGGCGGCGuccugcugugccGCGccGGCgGCCAGggccGAGGAg -3'
miRNA:   3'- -CCGCUGC------------UGC--UCGgCGGUUau--CUUCU- -5'
6632 5' -53.1 NC_001847.1 + 72219 0.66 0.964604
Target:  5'- -cCGACGAgGAGCCGCCcgcGGGc-- -3'
miRNA:   3'- ccGCUGCUgCUCGGCGGuuaUCUucu -5'
6632 5' -53.1 NC_001847.1 + 102577 0.66 0.964604
Target:  5'- gGGCaGCGGCGGGCggCGCCAuccugcUGGgcGAc -3'
miRNA:   3'- -CCGcUGCUGCUCG--GCGGUu-----AUCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 56623 0.66 0.973693
Target:  5'- cGGCGACaccagccgcGCGAGCaGCCGGccGAGGGu -3'
miRNA:   3'- -CCGCUGc--------UGCUCGgCGGUUauCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 103623 0.66 0.961137
Target:  5'- aGGCgGGgGACGAcGCCGCgGAc-GAGGAc -3'
miRNA:   3'- -CCG-CUgCUGCU-CGGCGgUUauCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.