miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6632 5' -53.1 NC_001847.1 + 488 0.69 0.890103
Target:  5'- cGGCGGCGGCgGGGCgGCCGcgcgccaaccccccuGUccgcGGAGGGc -3'
miRNA:   3'- -CCGCUGCUG-CUCGgCGGU---------------UA----UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 578 0.71 0.815737
Target:  5'- uGGCGGCGACGAGgCCGUCuuuGUGu---- -3'
miRNA:   3'- -CCGCUGCUGCUC-GGCGGu--UAUcuucu -5'
6632 5' -53.1 NC_001847.1 + 810 0.66 0.961137
Target:  5'- aGGCgGGgGACGAcGCCGCgGAc-GAGGAc -3'
miRNA:   3'- -CCG-CUgCUGCU-CGGCGgUUauCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 880 0.68 0.907192
Target:  5'- cGGCGGCGGCccgcgccgGGGCCGCCGc------- -3'
miRNA:   3'- -CCGCUGCUG--------CUCGGCGGUuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 1492 0.66 0.961137
Target:  5'- aGCGGCGGCgccucgggguaGAGCCGCgcGUAGgcGGc -3'
miRNA:   3'- cCGCUGCUG-----------CUCGGCGguUAUCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 1935 0.67 0.940291
Target:  5'- cGGCGGCcacuCGGGCCGCCGGc------ -3'
miRNA:   3'- -CCGCUGcu--GCUCGGCGGUUaucuucu -5'
6632 5' -53.1 NC_001847.1 + 2075 0.68 0.93025
Target:  5'- cGGUGGCGGCGAGCgCcCCGcgGGGc-- -3'
miRNA:   3'- -CCGCUGCUGCUCG-GcGGUuaUCUucu -5'
6632 5' -53.1 NC_001847.1 + 2104 0.7 0.833059
Target:  5'- cGCGGCGGCGGGCCGCgAu------- -3'
miRNA:   3'- cCGCUGCUGCUCGGCGgUuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 2146 0.7 0.8576
Target:  5'- aGGCGAgCGcCGGG-CGCCAGggcucggGGAAGAg -3'
miRNA:   3'- -CCGCU-GCuGCUCgGCGGUUa------UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 2293 0.68 0.924857
Target:  5'- cGGCGGCG--GGGCCGCCGGgcGGcauGGGc -3'
miRNA:   3'- -CCGCUGCugCUCGGCGGUUauCU---UCU- -5'
6632 5' -53.1 NC_001847.1 + 2437 0.67 0.935394
Target:  5'- cGGCGGcCGGCaGGGCCGCCGc------- -3'
miRNA:   3'- -CCGCU-GCUG-CUCGGCGGUuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 2474 0.8 0.3284
Target:  5'- gGGCGGCGGCGcccccGCCGCCGuguGAAGAc -3'
miRNA:   3'- -CCGCUGCUGCu----CGGCGGUuauCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 2872 0.68 0.907192
Target:  5'- aGGcCGACGcGCGGGCCGCCGc------- -3'
miRNA:   3'- -CC-GCUGC-UGCUCGGCGGUuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 3091 0.66 0.967848
Target:  5'- cGCGAUGACGccccccacgauAGCgGCCAgGUAGAGc- -3'
miRNA:   3'- cCGCUGCUGC-----------UCGgCGGU-UAUCUUcu -5'
6632 5' -53.1 NC_001847.1 + 3156 0.72 0.750125
Target:  5'- cGGCGgcGCGGCGGGCCGCCu-------- -3'
miRNA:   3'- -CCGC--UGCUGCUCGGCGGuuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 3192 0.69 0.900812
Target:  5'- aGGCGACGGCGcagcGGuCCGCCAGc------ -3'
miRNA:   3'- -CCGCUGCUGC----UC-GGCGGUUaucuucu -5'
6632 5' -53.1 NC_001847.1 + 3555 0.82 0.277817
Target:  5'- cGGCGGCGGCGuaguugaggguguAGCCGCCGGggcuGAGGAa -3'
miRNA:   3'- -CCGCUGCUGC-------------UCGGCGGUUau--CUUCU- -5'
6632 5' -53.1 NC_001847.1 + 3817 0.76 0.530351
Target:  5'- cGGCGGCGGCGcGCUGCCGGgccacgccucgccAGAAGGc -3'
miRNA:   3'- -CCGCUGCUGCuCGGCGGUUa------------UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 4421 0.66 0.970875
Target:  5'- -aCGGCGGCGAGCgcgCGCCGcagGGAAa- -3'
miRNA:   3'- ccGCUGCUGCUCG---GCGGUua-UCUUcu -5'
6632 5' -53.1 NC_001847.1 + 4773 0.69 0.892157
Target:  5'- gGGCGACGACaugaccGGCCGUgGGUgcgugcgguggccuGGggGAg -3'
miRNA:   3'- -CCGCUGCUGc-----UCGGCGgUUA--------------UCuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.