miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6632 5' -53.1 NC_001847.1 + 132609 0.74 0.648061
Target:  5'- cGGCGGCGGgaGcGCCGCCGGguccgagGGAAGGa -3'
miRNA:   3'- -CCGCUGCUg-CuCGGCGGUUa------UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 106630 0.76 0.530351
Target:  5'- cGGCGGCGGCGcGCUGCCGGgccacgccucgccAGAAGGc -3'
miRNA:   3'- -CCGCUGCUGCuCGGCGGUUa------------UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 134262 0.76 0.534384
Target:  5'- cGGCGGCcccggcGCGGGCCGCCGccgcgcGUGGAGGu -3'
miRNA:   3'- -CCGCUGc-----UGCUCGGCGGU------UAUCUUCu -5'
6632 5' -53.1 NC_001847.1 + 31965 0.76 0.544512
Target:  5'- cGGCGGCGGCGGGCC-CC-GUGGAc-- -3'
miRNA:   3'- -CCGCUGCUGCUCGGcGGuUAUCUucu -5'
6632 5' -53.1 NC_001847.1 + 44676 0.75 0.564947
Target:  5'- cGUGAcCGGCGAGCCGCgGAUGGGc-- -3'
miRNA:   3'- cCGCU-GCUGCUCGGCGgUUAUCUucu -5'
6632 5' -53.1 NC_001847.1 + 84222 0.75 0.575241
Target:  5'- aGGCccuGACGGCcgGGGCCGCCGcgggGGAGGAg -3'
miRNA:   3'- -CCG---CUGCUG--CUCGGCGGUua--UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 33708 0.75 0.575241
Target:  5'- cGCGGCGGCGcGUgGCCGAgcUGGggGAg -3'
miRNA:   3'- cCGCUGCUGCuCGgCGGUU--AUCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 85464 0.75 0.575241
Target:  5'- cGGCGACGGCGAGCagaacuacgGCCGuguacgcggAGAAGGc -3'
miRNA:   3'- -CCGCUGCUGCUCGg--------CGGUua-------UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 71702 0.75 0.595948
Target:  5'- gGGCaACGGCGAGCUGCCc---GAGGAc -3'
miRNA:   3'- -CCGcUGCUGCUCGGCGGuuauCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 97745 0.76 0.511354
Target:  5'- cGGCGGCGGCGgcagauacuugccAGCCGCCGGccgccagcagagAGAGGAc -3'
miRNA:   3'- -CCGCUGCUGC-------------UCGGCGGUUa-----------UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 97588 0.77 0.4946
Target:  5'- uGGCGcCGccCGAGCuCGUCGAUAGAGGAg -3'
miRNA:   3'- -CCGCuGCu-GCUCG-GCGGUUAUCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 131651 0.77 0.465667
Target:  5'- cGUGACGGCGccgcuGCCGCCGGUcGggGAc -3'
miRNA:   3'- cCGCUGCUGCu----CGGCGGUUAuCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 131266 0.83 0.217913
Target:  5'- cGGCGccgcGCGACGGGCCGCCGccgcUGGAGGGc -3'
miRNA:   3'- -CCGC----UGCUGCUCGGCGGUu---AUCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 3555 0.82 0.277817
Target:  5'- cGGCGGCGGCGuaguugaggguguAGCCGCCGGggcuGAGGAa -3'
miRNA:   3'- -CCGCUGCUGC-------------UCGGCGGUUau--CUUCU- -5'
6632 5' -53.1 NC_001847.1 + 2474 0.8 0.3284
Target:  5'- gGGCGGCGGCGcccccGCCGCCGuguGAAGAc -3'
miRNA:   3'- -CCGCUGCUGCu----CGGCGGUuauCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 125325 0.8 0.3284
Target:  5'- uGGCGGCGGCGGGCCggGCCGGUcugccgggacaaAGggGGc -3'
miRNA:   3'- -CCGCUGCUGCUCGG--CGGUUA------------UCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 7070 0.8 0.336048
Target:  5'- aGGCacGCGGCGAGCCGCCcgggccaguuGUAGGAGAc -3'
miRNA:   3'- -CCGc-UGCUGCUCGGCGGu---------UAUCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 77628 0.8 0.351732
Target:  5'- gGGCGAgGACGGcgcGCCGCCcGUGGAGGc -3'
miRNA:   3'- -CCGCUgCUGCU---CGGCGGuUAUCUUCu -5'
6632 5' -53.1 NC_001847.1 + 119610 0.8 0.359767
Target:  5'- cGGCGACGACGAGgcCCGCgAGgauGAAGGg -3'
miRNA:   3'- -CCGCUGCUGCUC--GGCGgUUau-CUUCU- -5'
6632 5' -53.1 NC_001847.1 + 33510 0.78 0.428512
Target:  5'- gGGCGGCGGCGGgcGCCGCCGc--GGAGGc -3'
miRNA:   3'- -CCGCUGCUGCU--CGGCGGUuauCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.