Results 1 - 20 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6632 | 5' | -53.1 | NC_001847.1 | + | 90572 | 1.12 | 0.003583 |
Target: 5'- gGGCGACGACGAGCCGCCAAUAGAAGAg -3' miRNA: 3'- -CCGCUGCUGCUCGGCGGUUAUCUUCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 28453 | 0.83 | 0.217913 |
Target: 5'- cGGCGccgcGCGACGGGCCGCCGccgcUGGAGGGc -3' miRNA: 3'- -CCGC----UGCUGCUCGGCGGUu---AUCUUCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 131266 | 0.83 | 0.217913 |
Target: 5'- cGGCGccgcGCGACGGGCCGCCGccgcUGGAGGGc -3' miRNA: 3'- -CCGC----UGCUGCUCGGCGGUu---AUCUUCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 3555 | 0.82 | 0.277817 |
Target: 5'- cGGCGGCGGCGuaguugaggguguAGCCGCCGGggcuGAGGAa -3' miRNA: 3'- -CCGCUGCUGC-------------UCGGCGGUUau--CUUCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 2474 | 0.8 | 0.3284 |
Target: 5'- gGGCGGCGGCGcccccGCCGCCGuguGAAGAc -3' miRNA: 3'- -CCGCUGCUGCu----CGGCGGUuauCUUCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 125325 | 0.8 | 0.3284 |
Target: 5'- uGGCGGCGGCGGGCCggGCCGGUcugccgggacaaAGggGGc -3' miRNA: 3'- -CCGCUGCUGCUCGG--CGGUUA------------UCuuCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 22512 | 0.8 | 0.3284 |
Target: 5'- uGGCGGCGGCGGGCCggGCCGGUcugccgggacaaAGggGGc -3' miRNA: 3'- -CCGCUGCUGCUCGG--CGGUUA------------UCuuCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 7070 | 0.8 | 0.336048 |
Target: 5'- aGGCacGCGGCGAGCCGCCcgggccaguuGUAGGAGAc -3' miRNA: 3'- -CCGc-UGCUGCUCGGCGGu---------UAUCUUCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 77628 | 0.8 | 0.351732 |
Target: 5'- gGGCGAgGACGGcgcGCCGCCcGUGGAGGc -3' miRNA: 3'- -CCGCUgCUGCU---CGGCGGuUAUCUUCu -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 53774 | 0.8 | 0.351732 |
Target: 5'- cGGCGAgGGCGgcagcaccgcAGCCGCCGcgAGGAGGu -3' miRNA: 3'- -CCGCUgCUGC----------UCGGCGGUuaUCUUCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 119610 | 0.8 | 0.359767 |
Target: 5'- cGGCGACGACGAGgcCCGCgAGgauGAAGGg -3' miRNA: 3'- -CCGCUGCUGCUC--GGCGgUUau-CUUCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 115116 | 0.78 | 0.410602 |
Target: 5'- gGGCGGCGGCcgcaGGGCCGCCcuauUGGAAGu -3' miRNA: 3'- -CCGCUGCUG----CUCGGCGGuu--AUCUUCu -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 33510 | 0.78 | 0.428512 |
Target: 5'- gGGCGGCGGCGGgcGCCGCCGc--GGAGGc -3' miRNA: 3'- -CCGCUGCUGCU--CGGCGGUuauCUUCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 29895 | 0.78 | 0.437638 |
Target: 5'- aGGCGGCGGCccugccGGCCGCCGcgGGggGc -3' miRNA: 3'- -CCGCUGCUGc-----UCGGCGGUuaUCuuCu -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 129600 | 0.78 | 0.446875 |
Target: 5'- cGGCGACGACuGGGCCGCCGucacGAGc- -3' miRNA: 3'- -CCGCUGCUG-CUCGGCGGUuau-CUUcu -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 28838 | 0.77 | 0.465667 |
Target: 5'- cGUGACGGCGccgcuGCCGCCGGUcGggGAc -3' miRNA: 3'- cCGCUGCUGCu----CGGCGGUUAuCuuCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 131651 | 0.77 | 0.465667 |
Target: 5'- cGUGACGGCGccgcuGCCGCCGGUcGggGAc -3' miRNA: 3'- cCGCUGCUGCu----CGGCGGUUAuCuuCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 97588 | 0.77 | 0.4946 |
Target: 5'- uGGCGcCGccCGAGCuCGUCGAUAGAGGAg -3' miRNA: 3'- -CCGCuGCu-GCUCG-GCGGUUAUCUUCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 20455 | 0.77 | 0.503439 |
Target: 5'- uGGCGACucuuuaaGGCGuGCCGCCAcgAGcAAGAa -3' miRNA: 3'- -CCGCUG-------CUGCuCGGCGGUuaUC-UUCU- -5' |
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6632 | 5' | -53.1 | NC_001847.1 | + | 97745 | 0.76 | 0.511354 |
Target: 5'- cGGCGGCGGCGgcagauacuugccAGCCGCCGGccgccagcagagAGAGGAc -3' miRNA: 3'- -CCGCUGCUGC-------------UCGGCGGUUa-----------UCUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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