miRNA display CGI


Results 1 - 20 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 3' -62.2 NC_001847.1 + 46755 0.66 0.589121
Target:  5'- gGCGCGcccGCCCgC-CGcGCGGGGC-CGg -3'
miRNA:   3'- aCGCGCu--CGGG-GuGCuCGCCCUGuGC- -5'
6646 3' -62.2 NC_001847.1 + 12460 0.66 0.595985
Target:  5'- cGCGCggcgGAGCCuCCGCGgcuucccgcguggcGGCGGGG-GCGg -3'
miRNA:   3'- aCGCG----CUCGG-GGUGC--------------UCGCCCUgUGC- -5'
6646 3' -62.2 NC_001847.1 + 32344 0.66 0.589121
Target:  5'- -uCGCGGGCCUguuUGAGCGGGuGCugGc -3'
miRNA:   3'- acGCGCUCGGGgu-GCUCGCCC-UGugC- -5'
6646 3' -62.2 NC_001847.1 + 32547 0.66 0.588141
Target:  5'- cGCGCGcAGCCCUcggcGCuGGGCGaccuggcGGACGCc -3'
miRNA:   3'- aCGCGC-UCGGGG----UG-CUCGC-------CCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 103212 0.66 0.593042
Target:  5'- cGCGCuccgaccgagaccgaGGGCCCgggGCGGGCGGGcgGCGg -3'
miRNA:   3'- aCGCG---------------CUCGGGg--UGCUCGCCCugUGC- -5'
6646 3' -62.2 NC_001847.1 + 16464 0.66 0.642278
Target:  5'- gGCuGCGGcccggcccaacccccGCCCUGCcuGGGUGGGGCACu -3'
miRNA:   3'- aCG-CGCU---------------CGGGGUG--CUCGCCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 61917 0.66 0.589121
Target:  5'- cGCGCcgccGCCCCccuccuccGCGucAGCGGcGGCGCGg -3'
miRNA:   3'- aCGCGcu--CGGGG--------UGC--UCGCC-CUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 80225 0.66 0.589121
Target:  5'- gGCGCucaaGAcCCCCGCGAGCucccGGGAaACGu -3'
miRNA:   3'- aCGCG----CUcGGGGUGCUCG----CCCUgUGC- -5'
6646 3' -62.2 NC_001847.1 + 60710 0.66 0.589121
Target:  5'- gGCGuCGugcGCCgCCACGAccuccacgacggGCGcGGGCGCGg -3'
miRNA:   3'- aCGC-GCu--CGG-GGUGCU------------CGC-CCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 49213 0.66 0.588141
Target:  5'- cGCGcCGGGgCCCGCGGGCuucguguacgucuGcGACGCGg -3'
miRNA:   3'- aCGC-GCUCgGGGUGCUCG-------------CcCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 63433 0.66 0.589121
Target:  5'- cGCcgGCGGGCCggcgcaCCGCGcAGaCGcGGACGCGg -3'
miRNA:   3'- aCG--CGCUCGG------GGUGC-UC-GC-CCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 83105 0.66 0.589121
Target:  5'- gGCGCGAuaaugaGCCCCuggcGCGAGCGcuaguGCGCGc -3'
miRNA:   3'- aCGCGCU------CGGGG----UGCUCGCcc---UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 11319 0.66 0.589121
Target:  5'- cGC-CGAGgCCgGCGGGCGGcuGGCGCc -3'
miRNA:   3'- aCGcGCUCgGGgUGCUCGCC--CUGUGc -5'
6646 3' -62.2 NC_001847.1 + 2741 0.66 0.589121
Target:  5'- aGCGCaGGGCgggaGCGAGCGaGGGCGCc -3'
miRNA:   3'- aCGCG-CUCGggg-UGCUCGC-CCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 22374 0.66 0.589121
Target:  5'- cUGgGaCGAGgcCCCCGCGGGgcCGGGGuCGCGa -3'
miRNA:   3'- -ACgC-GCUC--GGGGUGCUC--GCCCU-GUGC- -5'
6646 3' -62.2 NC_001847.1 + 80442 0.66 0.593042
Target:  5'- cGCGCGucguccuCCCCGCGGGCgccgccgccgccgucGGGcCGCGc -3'
miRNA:   3'- aCGCGCuc-----GGGGUGCUCG---------------CCCuGUGC- -5'
6646 3' -62.2 NC_001847.1 + 68371 0.66 0.589121
Target:  5'- aGCaCGAGCCCCGaagcgacgcCGAGC--GACACGa -3'
miRNA:   3'- aCGcGCUCGGGGU---------GCUCGccCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 2377 0.66 0.589121
Target:  5'- cGCGCG---CCCGCGAagacgGCGGuGACGCGc -3'
miRNA:   3'- aCGCGCucgGGGUGCU-----CGCC-CUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 33740 0.66 0.589121
Target:  5'- cGCGCaGAGCUgUACcAGCGccuGGACGCGc -3'
miRNA:   3'- aCGCG-CUCGGgGUGcUCGC---CCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 81791 0.66 0.589121
Target:  5'- aUGaCGCGgaccugguGGCCUaCGCGgaggcGGCGGGGCGCGc -3'
miRNA:   3'- -AC-GCGC--------UCGGG-GUGC-----UCGCCCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.