miRNA display CGI


Results 1 - 20 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 3' -62.2 NC_001847.1 + 1 0.66 0.618614
Target:  5'- gGC-CcAGcCCCCGCGcGgGGGGCGCGg -3'
miRNA:   3'- aCGcGcUC-GGGGUGCuCgCCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 16 0.7 0.381292
Target:  5'- cGCGCGGGCCCCcuGCGAcccCGGGGgGg- -3'
miRNA:   3'- aCGCGCUCGGGG--UGCUc--GCCCUgUgc -5'
6646 3' -62.2 NC_001847.1 + 52 0.67 0.540621
Target:  5'- gGCGCGuGCauugCgGCGGGCGGGG-GCGg -3'
miRNA:   3'- aCGCGCuCGg---GgUGCUCGCCCUgUGC- -5'
6646 3' -62.2 NC_001847.1 + 122 0.67 0.550229
Target:  5'- cGCGCcccGGCCCCGCccGCGGGcCuCGg -3'
miRNA:   3'- aCGCGc--UCGGGGUGcuCGCCCuGuGC- -5'
6646 3' -62.2 NC_001847.1 + 399 0.66 0.593042
Target:  5'- cGCGCuccgaccgagaccgaGGGCCCgggGCGGGCGGGcgGCGg -3'
miRNA:   3'- aCGCG---------------CUCGGGg--UGCUCGCCCugUGC- -5'
6646 3' -62.2 NC_001847.1 + 784 0.68 0.502811
Target:  5'- gGCGCcGGCCUCgucgucguccgACGAgGCGGGGgACGa -3'
miRNA:   3'- aCGCGcUCGGGG-----------UGCU-CGCCCUgUGC- -5'
6646 3' -62.2 NC_001847.1 + 964 0.66 0.588141
Target:  5'- cUGCGCcGGCaCCCGgGccGGCGGGGCuuccgccGCGg -3'
miRNA:   3'- -ACGCGcUCG-GGGUgC--UCGCCCUG-------UGC- -5'
6646 3' -62.2 NC_001847.1 + 1091 0.66 0.638335
Target:  5'- cGC-CGGGCgCCGCGGccGCGGGcgGCGCc -3'
miRNA:   3'- aCGcGCUCGgGGUGCU--CGCCC--UGUGc -5'
6646 3' -62.2 NC_001847.1 + 1229 0.76 0.167154
Target:  5'- cGCGCGGGCgCC-CGuGUGGGACAUa -3'
miRNA:   3'- aCGCGCUCGgGGuGCuCGCCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 1266 0.72 0.280992
Target:  5'- cGCGcCGAGCCCCcaGCGGuUGGcGGCGCGg -3'
miRNA:   3'- aCGC-GCUCGGGG--UGCUcGCC-CUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 1353 0.66 0.618614
Target:  5'- cUGCGCGGccauguccuugcGCCCguCGAGCGccGGcaGCACGc -3'
miRNA:   3'- -ACGCGCU------------CGGGguGCUCGC--CC--UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 1432 0.66 0.628473
Target:  5'- gUGCGCGGGCCCa--GGcGCGuGGcCACc -3'
miRNA:   3'- -ACGCGCUCGGGgugCU-CGC-CCuGUGc -5'
6646 3' -62.2 NC_001847.1 + 1656 0.66 0.608764
Target:  5'- gUGCGCcuGCCCgACGGcCGGGccgucGCGCGg -3'
miRNA:   3'- -ACGCGcuCGGGgUGCUcGCCC-----UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 2093 0.73 0.250614
Target:  5'- cGCG-GGGCCCgCGCGgcGGCGGGcCGCGa -3'
miRNA:   3'- aCGCgCUCGGG-GUGC--UCGCCCuGUGC- -5'
6646 3' -62.2 NC_001847.1 + 2188 0.66 0.618614
Target:  5'- -cCGCGAGCCgcgCCGCGAccuCGGGGCGg- -3'
miRNA:   3'- acGCGCUCGG---GGUGCUc--GCCCUGUgc -5'
6646 3' -62.2 NC_001847.1 + 2244 0.72 0.280992
Target:  5'- gGCGCGGGCgugugguaguCCC-CGGGCGGcACGCGg -3'
miRNA:   3'- aCGCGCUCG----------GGGuGCUCGCCcUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 2310 0.7 0.397439
Target:  5'- gGCGgcaUGGGCCCCagcacGCGGGCGGGcaGCGg -3'
miRNA:   3'- aCGC---GCUCGGGG-----UGCUCGCCCugUGC- -5'
6646 3' -62.2 NC_001847.1 + 2377 0.66 0.589121
Target:  5'- cGCGCG---CCCGCGAagacgGCGGuGACGCGc -3'
miRNA:   3'- aCGCGCucgGGGUGCU-----CGCC-CUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 2452 0.74 0.233174
Target:  5'- cGCaGCGAGCUCCcgaucgaGCGGGCGGcGGCGCc -3'
miRNA:   3'- aCG-CGCUCGGGG-------UGCUCGCC-CUGUGc -5'
6646 3' -62.2 NC_001847.1 + 2605 0.69 0.430157
Target:  5'- -aCGCGAGCCcgCCGCGccggaggugcuucGGCGGGAC-CGc -3'
miRNA:   3'- acGCGCUCGG--GGUGC-------------UCGCCCUGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.