miRNA display CGI


Results 1 - 20 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 3' -62.2 NC_001847.1 + 47885 0.75 0.184219
Target:  5'- cGCGCGcGCgCCCGCGcGcCGGGGCGCa -3'
miRNA:   3'- aCGCGCuCG-GGGUGCuC-GCCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 32034 0.77 0.147824
Target:  5'- cGCGCGGGgaagcCCCCGCGAaaggucCGGGGCGCGg -3'
miRNA:   3'- aCGCGCUC-----GGGGUGCUc-----GCCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 66322 0.77 0.147824
Target:  5'- -uCGCGGcGCCCUgcgGCGGGUGGGGCGCGg -3'
miRNA:   3'- acGCGCU-CGGGG---UGCUCGCCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 10069 0.76 0.159163
Target:  5'- cGCGCGGGCCcagcgccccgCCGCGcGCGGGAgCACa -3'
miRNA:   3'- aCGCGCUCGG----------GGUGCuCGCCCU-GUGc -5'
6646 3' -62.2 NC_001847.1 + 54564 0.76 0.167154
Target:  5'- gGCGCGgaggacgacGGCCCCGCGGGCuGGGcgGCGCu -3'
miRNA:   3'- aCGCGC---------UCGGGGUGCUCG-CCC--UGUGc -5'
6646 3' -62.2 NC_001847.1 + 1229 0.76 0.167154
Target:  5'- cGCGCGGGCgCC-CGuGUGGGACAUa -3'
miRNA:   3'- aCGCGCUCGgGGuGCuCGCCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 134832 0.76 0.171282
Target:  5'- aGCGCGaAGCUCC---GGCGGGGCGCGg -3'
miRNA:   3'- aCGCGC-UCGGGGugcUCGCCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 6100 0.76 0.175502
Target:  5'- gGCGCGAGaCgCCCGCGAgGCGcGGCGCGa -3'
miRNA:   3'- aCGCGCUC-G-GGGUGCU-CGCcCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 134787 0.75 0.179813
Target:  5'- gGgGCGGGCCCCGgggcgcgaagccCGGGaGGGACGCGg -3'
miRNA:   3'- aCgCGCUCGGGGU------------GCUCgCCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 106108 0.77 0.13385
Target:  5'- gGCGCGcAGCUCgGCGAGCGcGGCGCGg -3'
miRNA:   3'- aCGCGC-UCGGGgUGCUCGCcCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 133060 0.78 0.124178
Target:  5'- cGCGCGGGCCCC----GCGGGGCGCu -3'
miRNA:   3'- aCGCGCUCGGGGugcuCGCCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 105711 0.78 0.124178
Target:  5'- cGCGuCGAGUaCCgCGCGAGCGGGGcCACGg -3'
miRNA:   3'- aCGC-GCUCG-GG-GUGCUCGCCCU-GUGC- -5'
6646 3' -62.2 NC_001847.1 + 18788 0.85 0.036914
Target:  5'- aGCGCGAGCUCCGCG-GCGGcGGCGCGc -3'
miRNA:   3'- aCGCGCUCGGGGUGCuCGCC-CUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 41831 0.82 0.062272
Target:  5'- gGCGCGGGUCCCA-GGGCuGGGGCACGu -3'
miRNA:   3'- aCGCGCUCGGGGUgCUCG-CCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 8123 0.81 0.072547
Target:  5'- gGCGCgGGGCCCCAgGGGCGGGcggugcuGCGCGa -3'
miRNA:   3'- aCGCG-CUCGGGGUgCUCGCCC-------UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 36972 0.81 0.076583
Target:  5'- aGCGCGGGCgCCgGCGAGCGGGccCGCGc -3'
miRNA:   3'- aCGCGCUCG-GGgUGCUCGCCCu-GUGC- -5'
6646 3' -62.2 NC_001847.1 + 18843 0.8 0.089332
Target:  5'- cGCGCGcGCCgCACGggucAGCGGGGCACGc -3'
miRNA:   3'- aCGCGCuCGGgGUGC----UCGCCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 135014 0.79 0.104082
Target:  5'- gGCcCGAGgCCCGCGGGCGGGGC-CGg -3'
miRNA:   3'- aCGcGCUCgGGGUGCUCGCCCUGuGC- -5'
6646 3' -62.2 NC_001847.1 + 35295 0.79 0.106754
Target:  5'- cUGCGC-AGCCCCGcCGAGCGGcGCGCGc -3'
miRNA:   3'- -ACGCGcUCGGGGU-GCUCGCCcUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 114912 0.78 0.118095
Target:  5'- gGgGCGAGCCCCugGGGCacgGGGGCucGCGu -3'
miRNA:   3'- aCgCGCUCGGGGugCUCG---CCCUG--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.