miRNA display CGI


Results 1 - 20 of 516 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 3' -62.2 NC_001847.1 + 96090 1.08 0.000835
Target:  5'- cUGCGCGAGCCCCACGAGCGGGACACGa -3'
miRNA:   3'- -ACGCGCUCGGGGUGCUCGCCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 18788 0.85 0.036914
Target:  5'- aGCGCGAGCUCCGCG-GCGGcGGCGCGc -3'
miRNA:   3'- aCGCGCUCGGGGUGCuCGCC-CUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 73773 0.83 0.050562
Target:  5'- gGCGCGGGCCgCUACGAgcGCGGGGCGCu -3'
miRNA:   3'- aCGCGCUCGG-GGUGCU--CGCCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 41831 0.82 0.062272
Target:  5'- gGCGCGGGUCCCA-GGGCuGGGGCACGu -3'
miRNA:   3'- aCGCGCUCGGGGUgCUCG-CCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 8123 0.81 0.072547
Target:  5'- gGCGCgGGGCCCCAgGGGCGGGcggugcuGCGCGa -3'
miRNA:   3'- aCGCG-CUCGGGGUgCUCGCCC-------UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 36972 0.81 0.076583
Target:  5'- aGCGCGGGCgCCgGCGAGCGGGccCGCGc -3'
miRNA:   3'- aCGCGCUCG-GGgUGCUCGCCCu-GUGC- -5'
6646 3' -62.2 NC_001847.1 + 18843 0.8 0.089332
Target:  5'- cGCGCGcGCCgCACGggucAGCGGGGCACGc -3'
miRNA:   3'- aCGCGCuCGGgGUGC----UCGCCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 135014 0.79 0.104082
Target:  5'- gGCcCGAGgCCCGCGGGCGGGGC-CGg -3'
miRNA:   3'- aCGcGCUCgGGGUGCUCGCCCUGuGC- -5'
6646 3' -62.2 NC_001847.1 + 32201 0.79 0.104082
Target:  5'- gGCcCGAGgCCCGCGGGCGGGGC-CGg -3'
miRNA:   3'- aCGcGCUCgGGGUGCUCGCCCUGuGC- -5'
6646 3' -62.2 NC_001847.1 + 90746 0.79 0.104082
Target:  5'- gGCGCGuggccgGGCCCCGgGAGCGGGAgCGCc -3'
miRNA:   3'- aCGCGC------UCGGGGUgCUCGCCCU-GUGc -5'
6646 3' -62.2 NC_001847.1 + 35295 0.79 0.106754
Target:  5'- cUGCGC-AGCCCCGcCGAGCGGcGCGCGc -3'
miRNA:   3'- -ACGCGcUCGGGGU-GCUCGCCcUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 114912 0.78 0.118095
Target:  5'- gGgGCGAGCCCCugGGGCacgGGGGCucGCGu -3'
miRNA:   3'- aCgCGCUCGGGGugCUCG---CCCUG--UGC- -5'
6646 3' -62.2 NC_001847.1 + 133060 0.78 0.124178
Target:  5'- cGCGCGGGCCCC----GCGGGGCGCu -3'
miRNA:   3'- aCGCGCUCGGGGugcuCGCCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 105711 0.78 0.124178
Target:  5'- cGCGuCGAGUaCCgCGCGAGCGGGGcCACGg -3'
miRNA:   3'- aCGC-GCUCG-GG-GUGCUCGCCCU-GUGC- -5'
6646 3' -62.2 NC_001847.1 + 2898 0.78 0.124179
Target:  5'- cGCGuCGAGUaCCgCGCGAGCGGGGcCACGg -3'
miRNA:   3'- aCGC-GCUCG-GG-GUGCUCGCCCU-GUGC- -5'
6646 3' -62.2 NC_001847.1 + 30247 0.78 0.124179
Target:  5'- cGCGCGGGCCCC----GCGGGGCGCu -3'
miRNA:   3'- aCGCGCUCGGGGugcuCGCCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 56189 0.78 0.124179
Target:  5'- cUGCGCGAGCgCCAgccuGCGGGGCACa -3'
miRNA:   3'- -ACGCGCUCGgGGUgcu-CGCCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 88375 0.78 0.12701
Target:  5'- gGCGCGgcggaccGGCCCCGCGcGGCGGGcggGCGCGc -3'
miRNA:   3'- aCGCGC-------UCGGGGUGC-UCGCCC---UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 14648 0.78 0.127328
Target:  5'- cGCGCGccGCUcgCUGCGAGCGGGGCGCGu -3'
miRNA:   3'- aCGCGCu-CGG--GGUGCUCGCCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 45211 0.77 0.130551
Target:  5'- aGCGCGAgcGCCgCCGCGAGCGcGGccucGCGCGg -3'
miRNA:   3'- aCGCGCU--CGG-GGUGCUCGC-CC----UGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.