miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 5' -51.3 NC_001847.1 + 70434 0.66 0.976597
Target:  5'- cGCGUcgGUggcgguGCCGCGCcugacgcaCUGCGACa -3'
miRNA:   3'- uCGUAuaUAau----CGGCGUGa-------GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 32836 0.66 0.983428
Target:  5'- aGGCccgcg-UGGCCGC-CgagaCCGCGGCg -3'
miRNA:   3'- -UCGuauauaAUCGGCGuGa---GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 18593 0.66 0.97907
Target:  5'- uGCGcc-AUUAGCgCGCcgUCCGCGGCg -3'
miRNA:   3'- uCGUauaUAAUCG-GCGugAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 105858 0.66 0.97907
Target:  5'- cGGCGgcccggAGCaCGCGCUCCGgGuGCg -3'
miRNA:   3'- -UCGUauauaaUCG-GCGUGAGGCgC-UG- -5'
6646 5' -51.3 NC_001847.1 + 89510 0.66 0.976078
Target:  5'- cGGCAgcgcgc-GCCGCGCUgCCGCcgGGCg -3'
miRNA:   3'- -UCGUauauaauCGGCGUGA-GGCG--CUG- -5'
6646 5' -51.3 NC_001847.1 + 18242 0.66 0.97907
Target:  5'- cGCGgGUGgauccaagaUGGCCGCGa-CCGCGGCg -3'
miRNA:   3'- uCGUaUAUa--------AUCGGCGUgaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 62073 0.66 0.976597
Target:  5'- cGCGUcgAcuu-CCGCGC-CCGCGGCg -3'
miRNA:   3'- uCGUAuaUaaucGGCGUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 120113 0.66 0.985511
Target:  5'- cAGCucgcccggcGGCCGCgGCUCgCGCGGCc -3'
miRNA:   3'- -UCGuauauaa--UCGGCG-UGAG-GCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 95130 0.66 0.97907
Target:  5'- cGCcgAcuUUAucGCCGUGCUgCGCGACg -3'
miRNA:   3'- uCGuaUauAAU--CGGCGUGAgGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 22736 0.66 0.976597
Target:  5'- aAGUAUAUGacuGCCGCGCggCGCG-Ca -3'
miRNA:   3'- -UCGUAUAUaauCGGCGUGagGCGCuG- -5'
6646 5' -51.3 NC_001847.1 + 121524 0.66 0.983428
Target:  5'- uGCGUGUGUcccgcgAGCUGCGUUCCGgGGa -3'
miRNA:   3'- uCGUAUAUAa-----UCGGCGUGAGGCgCUg -5'
6646 5' -51.3 NC_001847.1 + 50673 0.66 0.97736
Target:  5'- gGGCGacgugcccugcgGGCUGUGCUCgCGCGACg -3'
miRNA:   3'- -UCGUauauaa------UCGGCGUGAG-GCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 36118 0.66 0.981561
Target:  5'- gGGCGccuuccacgaAGCCGCGCgcgCCGCgGACg -3'
miRNA:   3'- -UCGUauauaa----UCGGCGUGa--GGCG-CUG- -5'
6646 5' -51.3 NC_001847.1 + 27556 0.66 0.981344
Target:  5'- cGGCGgcUGggAGCCGCA-UCCGCa-- -3'
miRNA:   3'- -UCGUauAUaaUCGGCGUgAGGCGcug -5'
6646 5' -51.3 NC_001847.1 + 14301 0.66 0.981344
Target:  5'- uGGCGUGgcc-GGCCGC-CUCuCGgGGCc -3'
miRNA:   3'- -UCGUAUauaaUCGGCGuGAG-GCgCUG- -5'
6646 5' -51.3 NC_001847.1 + 11612 0.66 0.976597
Target:  5'- cAGCGgccuUGgccUUAGCCGaGC-CCGCGGCa -3'
miRNA:   3'- -UCGUau--AU---AAUCGGCgUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 104199 0.66 0.976853
Target:  5'- cGGCAgcacgcgcuGCCgGUACUCgCGCGGCg -3'
miRNA:   3'- -UCGUauauaau--CGG-CGUGAG-GCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 56813 0.66 0.976078
Target:  5'- cGCGgcgcccaAGCCGgGC-CCGCGGCg -3'
miRNA:   3'- uCGUauauaa-UCGGCgUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 27863 0.66 0.981344
Target:  5'- gGGCcc-UGUgGGCCGCGCUCgaGCGGu -3'
miRNA:   3'- -UCGuauAUAaUCGGCGUGAGg-CGCUg -5'
6646 5' -51.3 NC_001847.1 + 19400 0.66 0.976597
Target:  5'- cGGUGUGUGUgcccaUGGCCaccagcGCGC-CCGUGGCg -3'
miRNA:   3'- -UCGUAUAUA-----AUCGG------CGUGaGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.