miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 5' -51.3 NC_001847.1 + 494 0.66 0.983228
Target:  5'- cGGCGg--GgcGGCCGCGCgccaaccccccugUCCGCGGa -3'
miRNA:   3'- -UCGUauaUaaUCGGCGUG-------------AGGCGCUg -5'
6646 5' -51.3 NC_001847.1 + 1101 0.67 0.967897
Target:  5'- cGCGgccgcgGGCgGCGCcgCCGCGGCc -3'
miRNA:   3'- uCGUauauaaUCGgCGUGa-GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 1164 0.67 0.967245
Target:  5'- cGGCAgcgc--GGCCGCGCagaaggccaccgCCGCGGCc -3'
miRNA:   3'- -UCGUauauaaUCGGCGUGa-----------GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 1386 0.66 0.976853
Target:  5'- cGGCAgcacgcgcuGCCgGUACUCgCGCGGCg -3'
miRNA:   3'- -UCGUauauaau--CGG-CGUGAG-GCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 1713 0.67 0.973916
Target:  5'- gAGCAcg-AUcAGCCGcCGCcgcgCCGCGGCc -3'
miRNA:   3'- -UCGUauaUAaUCGGC-GUGa---GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 2177 0.68 0.944102
Target:  5'- gAGCGgGUGguccgcgAGCCGCg--CCGCGACc -3'
miRNA:   3'- -UCGUaUAUaa-----UCGGCGugaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 2211 0.69 0.910997
Target:  5'- gGGCGgcaGUaGGCCGCcaGCgCCGCGGCg -3'
miRNA:   3'- -UCGUauaUAaUCGGCG--UGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 2362 0.66 0.98533
Target:  5'- cGCAUGagGUccAGUCGCGCgcCCGCGAa -3'
miRNA:   3'- uCGUAUa-UAa-UCGGCGUGa-GGCGCUg -5'
6646 5' -51.3 NC_001847.1 + 3045 0.66 0.97907
Target:  5'- cGGCGgcccggAGCaCGCGCUCCGgGuGCg -3'
miRNA:   3'- -UCGUauauaaUCG-GCGUGAGGCgC-UG- -5'
6646 5' -51.3 NC_001847.1 + 3877 0.68 0.94689
Target:  5'- cGGCGgcggcccGUCGCGCggcgCCGCGGCg -3'
miRNA:   3'- -UCGUauauaauCGGCGUGa---GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 4169 0.66 0.98533
Target:  5'- gAGCGggccuUGUUuugGGCCGCGCgcccgugggCCGCGcGCa -3'
miRNA:   3'- -UCGUau---AUAA---UCGGCGUGa--------GGCGC-UG- -5'
6646 5' -51.3 NC_001847.1 + 4316 0.69 0.928741
Target:  5'- cGGCGgcUAUgacGGCCGCuucggCCGCGGCc -3'
miRNA:   3'- -UCGUauAUAa--UCGGCGuga--GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 4377 0.66 0.98533
Target:  5'- cGCGaccgcgAGCgCGCGCgCCGCGGCc -3'
miRNA:   3'- uCGUauauaaUCG-GCGUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 4434 0.69 0.903235
Target:  5'- cGCccccuc-GGCCucggcGCACUCCGCGACg -3'
miRNA:   3'- uCGuauauaaUCGG-----CGUGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 5427 0.67 0.971018
Target:  5'- gAGCGcg-GUUAGCCGCGCgUCuCGCu-- -3'
miRNA:   3'- -UCGUauaUAAUCGGCGUG-AG-GCGcug -5'
6646 5' -51.3 NC_001847.1 + 5457 0.72 0.79908
Target:  5'- aAGCGcGUcccGGCCGCuCUCUGCGGCg -3'
miRNA:   3'- -UCGUaUAuaaUCGGCGuGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 6765 0.67 0.973916
Target:  5'- cGGCcgGUGcgAGgCGCcagcuGCUCCGUGGCc -3'
miRNA:   3'- -UCGuaUAUaaUCgGCG-----UGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 8583 0.77 0.53756
Target:  5'- cAGCGUGgugGUUAGCCGCGCgagcgucagCCGCaGCg -3'
miRNA:   3'- -UCGUAUa--UAAUCGGCGUGa--------GGCGcUG- -5'
6646 5' -51.3 NC_001847.1 + 9482 0.74 0.708502
Target:  5'- cGUAUAcgaagAGCUGCGCgCCGCGACg -3'
miRNA:   3'- uCGUAUauaa-UCGGCGUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 10108 0.71 0.826635
Target:  5'- cGGCGgggaa-AGCCGC-CUUCGCGGCg -3'
miRNA:   3'- -UCGUauauaaUCGGCGuGAGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.