miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 5' -51.3 NC_001847.1 + 51945 0.71 0.826635
Target:  5'- gGGCGcgac--GGCCGCGCgaccCCGCGGCa -3'
miRNA:   3'- -UCGUauauaaUCGGCGUGa---GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 100648 0.74 0.718997
Target:  5'- cGGCGccag--GGCCGCGCUgCUGCGGCg -3'
miRNA:   3'- -UCGUauauaaUCGGCGUGA-GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 86416 0.73 0.739729
Target:  5'- cAGCucguggauuUGUUGGCgGCGCUgCGCGGCg -3'
miRNA:   3'- -UCGuau------AUAAUCGgCGUGAgGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 87480 0.72 0.789546
Target:  5'- cGCuucGUAaacUUGGCCGUGCUCgGCGGCu -3'
miRNA:   3'- uCGua-UAU---AAUCGGCGUGAGgCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 5457 0.72 0.79908
Target:  5'- aAGCGcGUcccGGCCGCuCUCUGCGGCg -3'
miRNA:   3'- -UCGUaUAuaaUCGGCGuGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 133213 0.72 0.79908
Target:  5'- cGGCGgcccgagUGGCCGcCGCgCCGCGGCg -3'
miRNA:   3'- -UCGUauaua--AUCGGC-GUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 115788 0.72 0.808446
Target:  5'- gAGCGUucgcggAGCCGCugcgGCUCCGCGcGCu -3'
miRNA:   3'- -UCGUAuauaa-UCGGCG----UGAGGCGC-UG- -5'
6646 5' -51.3 NC_001847.1 + 93744 0.72 0.817634
Target:  5'- cGGCAgcUGgaGGCCGCGCggcugCCgGCGGCg -3'
miRNA:   3'- -UCGUauAUaaUCGGCGUGa----GG-CGCUG- -5'
6646 5' -51.3 NC_001847.1 + 10108 0.71 0.826635
Target:  5'- cGGCGgggaa-AGCCGC-CUUCGCGGCg -3'
miRNA:   3'- -UCGUauauaaUCGGCGuGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 34084 0.74 0.718997
Target:  5'- gAGCGcGUGgcGGCCGCcgugGCUCgCGCGGCg -3'
miRNA:   3'- -UCGUaUAUaaUCGGCG----UGAG-GCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 9482 0.74 0.708502
Target:  5'- cGUAUAcgaagAGCUGCGCgCCGCGACg -3'
miRNA:   3'- uCGUAUauaa-UCGGCGUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 26998 0.74 0.697936
Target:  5'- cGGCGgcgcgGUU-GCCGUACUCgGCGGCg -3'
miRNA:   3'- -UCGUaua--UAAuCGGCGUGAGgCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 67621 0.78 0.466435
Target:  5'- gAGgAUGUcGUUGGCCGCG-UCCGCGACc -3'
miRNA:   3'- -UCgUAUA-UAAUCGGCGUgAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 8583 0.77 0.53756
Target:  5'- cAGCGUGgugGUUAGCCGCGCgagcgucagCCGCaGCg -3'
miRNA:   3'- -UCGUAUa--UAAUCGGCGUGa--------GGCGcUG- -5'
6646 5' -51.3 NC_001847.1 + 80813 0.76 0.569207
Target:  5'- cGGCGgcgaa-GGCCGCGCgCCGCGACu -3'
miRNA:   3'- -UCGUauauaaUCGGCGUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 25525 0.76 0.590563
Target:  5'- aGGCGcg-GUUGGCgCGCaccgGCUCCGCGACc -3'
miRNA:   3'- -UCGUauaUAAUCG-GCG----UGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 15015 0.75 0.64439
Target:  5'- cGCGgugg--GGCCGCGCgagCCGCGGCc -3'
miRNA:   3'- uCGUauauaaUCGGCGUGa--GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 32748 0.75 0.64439
Target:  5'- cGGCGgcUAUUuucgcgGGCgGCGCUUCGCGACg -3'
miRNA:   3'- -UCGUauAUAA------UCGgCGUGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 84362 0.75 0.65516
Target:  5'- cGCgagGUGUAUUgagcGGCCGCGgaCCGCGGCa -3'
miRNA:   3'- uCG---UAUAUAA----UCGGCGUgaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 31910 0.74 0.696875
Target:  5'- cGCAgaucacGGCCGCggccgcgGCUCCGCGGCg -3'
miRNA:   3'- uCGUauauaaUCGGCG-------UGAGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.