miRNA display CGI


Results 1 - 20 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 5' -51.3 NC_001847.1 + 96126 1.11 0.004424
Target:  5'- gAGCAUAUAUUAGCCGCACUCCGCGACg -3'
miRNA:   3'- -UCGUAUAUAAUCGGCGUGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 100357 0.82 0.309703
Target:  5'- cGCGgGUcgUAGCCGCGCgCCGCGGCc -3'
miRNA:   3'- uCGUaUAuaAUCGGCGUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 103799 0.81 0.340807
Target:  5'- cGGCGUGUAgaAGCCGCACUCCccauacacgcGCGAa -3'
miRNA:   3'- -UCGUAUAUaaUCGGCGUGAGG----------CGCUg -5'
6646 5' -51.3 NC_001847.1 + 50749 0.79 0.428973
Target:  5'- uGCGUGUGUUuauugucgcgggucuGCCGCGgUCCGCGGCc -3'
miRNA:   3'- uCGUAUAUAAu--------------CGGCGUgAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 67621 0.78 0.466435
Target:  5'- gAGgAUGUcGUUGGCCGCG-UCCGCGACc -3'
miRNA:   3'- -UCgUAUA-UAAUCGGCGUgAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 8583 0.77 0.53756
Target:  5'- cAGCGUGgugGUUAGCCGCGCgagcgucagCCGCaGCg -3'
miRNA:   3'- -UCGUAUa--UAAUCGGCGUGa--------GGCGcUG- -5'
6646 5' -51.3 NC_001847.1 + 80813 0.76 0.569207
Target:  5'- cGGCGgcgaa-GGCCGCGCgCCGCGACu -3'
miRNA:   3'- -UCGUauauaaUCGGCGUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 25525 0.76 0.590563
Target:  5'- aGGCGcg-GUUGGCgCGCaccgGCUCCGCGACc -3'
miRNA:   3'- -UCGUauaUAAUCG-GCG----UGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 82598 0.75 0.622827
Target:  5'- cAGCAUGUc--GGCCGCGCccUCCgGCGACc -3'
miRNA:   3'- -UCGUAUAuaaUCGGCGUG--AGG-CGCUG- -5'
6646 5' -51.3 NC_001847.1 + 101572 0.75 0.629296
Target:  5'- cGGCAccgcgcacGGCCGC-CUCCGCGGCg -3'
miRNA:   3'- -UCGUauauaa--UCGGCGuGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 32748 0.75 0.64439
Target:  5'- cGGCGgcUAUUuucgcgGGCgGCGCUUCGCGACg -3'
miRNA:   3'- -UCGUauAUAA------UCGgCGUGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 15015 0.75 0.64439
Target:  5'- cGCGgugg--GGCCGCGCgagCCGCGGCc -3'
miRNA:   3'- uCGUauauaaUCGGCGUGa--GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 84362 0.75 0.65516
Target:  5'- cGCgagGUGUAUUgagcGGCCGCGgaCCGCGGCa -3'
miRNA:   3'- uCG---UAUAUAA----UCGGCGUgaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 31910 0.74 0.696875
Target:  5'- cGCAgaucacGGCCGCggccgcgGCUCCGCGGCg -3'
miRNA:   3'- uCGUauauaaUCGGCG-------UGAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 134500 0.74 0.697936
Target:  5'- gGGUGUAgugugGGCCGUGCggCCGCGGCg -3'
miRNA:   3'- -UCGUAUauaa-UCGGCGUGa-GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 26998 0.74 0.697936
Target:  5'- cGGCGgcgcgGUU-GCCGUACUCgGCGGCg -3'
miRNA:   3'- -UCGUaua--UAAuCGGCGUGAGgCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 9482 0.74 0.708502
Target:  5'- cGUAUAcgaagAGCUGCGCgCCGCGACg -3'
miRNA:   3'- uCGUAUauaa-UCGGCGUGaGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 34084 0.74 0.718997
Target:  5'- gAGCGcGUGgcGGCCGCcgugGCUCgCGCGGCg -3'
miRNA:   3'- -UCGUaUAUaaUCGGCG----UGAG-GCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 100648 0.74 0.718997
Target:  5'- cGGCGccag--GGCCGCGCUgCUGCGGCg -3'
miRNA:   3'- -UCGUauauaaUCGGCGUGA-GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 86416 0.73 0.739729
Target:  5'- cAGCucguggauuUGUUGGCgGCGCUgCGCGGCg -3'
miRNA:   3'- -UCGuau------AUAAUCGgCGUGAgGCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.