miRNA display CGI


Results 1 - 20 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6650 3' -56 NC_001847.1 + 75370 0.66 0.900387
Target:  5'- uCUCGgcggGCAUGggcacgGCACCGGa--CGCGGc -3'
miRNA:   3'- -GAGCa---UGUGCa-----UGUGGCCcugGCGCC- -5'
6650 3' -56 NC_001847.1 + 34405 0.66 0.912533
Target:  5'- -gCGgcagACGCG-GCGCUGGGgGCgGCGGa -3'
miRNA:   3'- gaGCa---UGUGCaUGUGGCCC-UGgCGCC- -5'
6650 3' -56 NC_001847.1 + 97245 0.66 0.899757
Target:  5'- gUUGU-CGCGguguauaUACACCGGGcCgGCGGc -3'
miRNA:   3'- gAGCAuGUGC-------AUGUGGCCCuGgCGCC- -5'
6650 3' -56 NC_001847.1 + 122366 0.66 0.912533
Target:  5'- aUCG-ACugGUACuuccugcggacgGCCGGcGACUGCGc -3'
miRNA:   3'- gAGCaUGugCAUG------------UGGCC-CUGGCGCc -5'
6650 3' -56 NC_001847.1 + 49896 0.66 0.918261
Target:  5'- -aCG-GCACGU--GCUGGGcccgGCCGCGGu -3'
miRNA:   3'- gaGCaUGUGCAugUGGCCC----UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 86708 0.66 0.906574
Target:  5'- cCUCgGUGCugGUGCucaacuccaCGcGGcCCGCGGa -3'
miRNA:   3'- -GAG-CAUGugCAUGug-------GC-CCuGGCGCC- -5'
6650 3' -56 NC_001847.1 + 82470 0.66 0.918261
Target:  5'- -gCGUGCgGCGUGCcgUGGGAcgagcCCGCGGc -3'
miRNA:   3'- gaGCAUG-UGCAUGugGCCCU-----GGCGCC- -5'
6650 3' -56 NC_001847.1 + 104342 0.66 0.918261
Target:  5'- cCUCGgcgcGCGCGaagGCGcCCGGGccgaagacgcGCCGCGa -3'
miRNA:   3'- -GAGCa---UGUGCa--UGU-GGCCC----------UGGCGCc -5'
6650 3' -56 NC_001847.1 + 81024 0.66 0.918261
Target:  5'- ----cGCAUGggcgACGCCGccgcGGACUGCGGg -3'
miRNA:   3'- gagcaUGUGCa---UGUGGC----CCUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 32060 0.66 0.906574
Target:  5'- -cCGggGCGCGgagACgGCgGGGGCCGgGGa -3'
miRNA:   3'- gaGCa-UGUGCa--UG-UGgCCCUGGCgCC- -5'
6650 3' -56 NC_001847.1 + 46200 0.66 0.923758
Target:  5'- -gCGgccgGCgGCGgccgcCGCCGGGccgGCCGCGGg -3'
miRNA:   3'- gaGCa---UG-UGCau---GUGGCCC---UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 116462 0.66 0.923758
Target:  5'- -gCGgGC-CGUGCugCGGGGCCucGCGu -3'
miRNA:   3'- gaGCaUGuGCAUGugGCCCUGG--CGCc -5'
6650 3' -56 NC_001847.1 + 77704 0.66 0.923758
Target:  5'- -gCGUGCGCGcGCGCgCuGGugCGCGc -3'
miRNA:   3'- gaGCAUGUGCaUGUG-GcCCugGCGCc -5'
6650 3' -56 NC_001847.1 + 46520 0.66 0.900387
Target:  5'- uCUCGcGCACGUGCGCgCGcacaaaguGGAgCGCGc -3'
miRNA:   3'- -GAGCaUGUGCAUGUG-GC--------CCUgGCGCc -5'
6650 3' -56 NC_001847.1 + 60287 0.66 0.912533
Target:  5'- -aUGUugAUcgGCAgCGGGGCgGCGGg -3'
miRNA:   3'- gaGCAugUGcaUGUgGCCCUGgCGCC- -5'
6650 3' -56 NC_001847.1 + 102641 0.66 0.900387
Target:  5'- ----cGCGCGUcucggggugacGCGCCGGGagcgGCCGCGa -3'
miRNA:   3'- gagcaUGUGCA-----------UGUGGCCC----UGGCGCc -5'
6650 3' -56 NC_001847.1 + 37711 0.66 0.918261
Target:  5'- -aCGUGCGCGcUGCugCuGGGCgCGCcGGu -3'
miRNA:   3'- gaGCAUGUGC-AUGugGcCCUG-GCG-CC- -5'
6650 3' -56 NC_001847.1 + 134221 0.66 0.906574
Target:  5'- gCUCGgGCuucccggcgccgGCGggcgGCgGCCGGcGGCCGCGGc -3'
miRNA:   3'- -GAGCaUG------------UGCa---UG-UGGCC-CUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 56587 0.66 0.929023
Target:  5'- --gGUgACGCGaacggcaGCGCCGGGACuCGCGu -3'
miRNA:   3'- gagCA-UGUGCa------UGUGGCCCUG-GCGCc -5'
6650 3' -56 NC_001847.1 + 106063 0.66 0.906574
Target:  5'- gCUCGccggcgGCAgGgGCGCCGGcGCCGCGcGg -3'
miRNA:   3'- -GAGCa-----UGUgCaUGUGGCCcUGGCGC-C- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.