miRNA display CGI


Results 1 - 20 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6650 3' -56 NC_001847.1 + 54486 0.72 0.64702
Target:  5'- -aCGgacaACgACGgcgGCGCCGGGGCCGgGGu -3'
miRNA:   3'- gaGCa---UG-UGCa--UGUGGCCCUGGCgCC- -5'
6650 3' -56 NC_001847.1 + 78176 0.74 0.54099
Target:  5'- gUCGUACGCGUACGcgugcguaggcuucuCgCGGcGGCUGCGGu -3'
miRNA:   3'- gAGCAUGUGCAUGU---------------G-GCC-CUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 45084 0.73 0.546881
Target:  5'- uUUGUGCuCGUgguGCGCCGGGACgGgGGu -3'
miRNA:   3'- gAGCAUGuGCA---UGUGGCCCUGgCgCC- -5'
6650 3' -56 NC_001847.1 + 13688 0.73 0.576615
Target:  5'- --aGUACGCGguccacgcugaGCGCCGGGACgUGCGGc -3'
miRNA:   3'- gagCAUGUGCa----------UGUGGCCCUG-GCGCC- -5'
6650 3' -56 NC_001847.1 + 51078 0.73 0.576615
Target:  5'- uUCGUGCGCGgGCuggUCGaGGACCGCGa -3'
miRNA:   3'- gAGCAUGUGCaUGu--GGC-CCUGGCGCc -5'
6650 3' -56 NC_001847.1 + 75690 0.73 0.586612
Target:  5'- -aUGUACAUGUAgaGCCGcucgggccacGGGCCGCGGg -3'
miRNA:   3'- gaGCAUGUGCAUg-UGGC----------CCUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 130740 0.73 0.59664
Target:  5'- -gCGgaggACGCGgacaGCGCCuGGGCCGCGGc -3'
miRNA:   3'- gaGCa---UGUGCa---UGUGGcCCUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 73289 0.73 0.59664
Target:  5'- gCUCGgcagGCGCGgccUACGCCGGcGACgGCGa -3'
miRNA:   3'- -GAGCa---UGUGC---AUGUGGCC-CUGgCGCc -5'
6650 3' -56 NC_001847.1 + 15552 0.72 0.626849
Target:  5'- --gGUGCGCGcGCgGCCGucGGGCCGCGGc -3'
miRNA:   3'- gagCAUGUGCaUG-UGGC--CCUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 134111 0.74 0.508045
Target:  5'- gCUCGUGCugcuGCGgcGCGCCGcGGGCgGCGGc -3'
miRNA:   3'- -GAGCAUG----UGCa-UGUGGC-CCUGgCGCC- -5'
6650 3' -56 NC_001847.1 + 73105 0.74 0.498514
Target:  5'- uUCGUGCGCacaGUcaACGCCGGGAgCCGCa- -3'
miRNA:   3'- gAGCAUGUG---CA--UGUGGCCCU-GGCGcc -5'
6650 3' -56 NC_001847.1 + 105781 0.75 0.489065
Target:  5'- cCUCGgcgGCAgCGc-CGCCGGGGCCGCGc -3'
miRNA:   3'- -GAGCa--UGU-GCauGUGGCCCUGGCGCc -5'
6650 3' -56 NC_001847.1 + 30426 0.8 0.261534
Target:  5'- gCUCGUggcggGCGCGgagGCGCCGGGGCUGCa- -3'
miRNA:   3'- -GAGCA-----UGUGCa--UGUGGCCCUGGCGcc -5'
6650 3' -56 NC_001847.1 + 104219 0.79 0.300506
Target:  5'- aCUCGcgcggcgGCACGgGCACCGcGGugCGCGGg -3'
miRNA:   3'- -GAGCa------UGUGCaUGUGGC-CCugGCGCC- -5'
6650 3' -56 NC_001847.1 + 33221 0.77 0.375094
Target:  5'- gCUCGgcUugGCGccGCGCCGGGcGCCGCGGc -3'
miRNA:   3'- -GAGC--AugUGCa-UGUGGCCC-UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 3860 0.76 0.408241
Target:  5'- -aCGUAgACG-GCGCCGGGGCUGCGc -3'
miRNA:   3'- gaGCAUgUGCaUGUGGCCCUGGCGCc -5'
6650 3' -56 NC_001847.1 + 28681 0.76 0.428988
Target:  5'- -aCGUGCGCGUAUcggcggcgcuggccuACCGGGACCccuuugugcGCGGc -3'
miRNA:   3'- gaGCAUGUGCAUG---------------UGGCCCUGG---------CGCC- -5'
6650 3' -56 NC_001847.1 + 52265 0.75 0.45215
Target:  5'- uUCGUGCucGCGUgcccgcGCGCCGGcuuugugugcgcGACCGCGGg -3'
miRNA:   3'- gAGCAUG--UGCA------UGUGGCC------------CUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 83341 0.75 0.470423
Target:  5'- aUCGacaUGCugGUcuGCgACCGGGACgCGCGGg -3'
miRNA:   3'- gAGC---AUGugCA--UG-UGGCCCUG-GCGCC- -5'
6650 3' -56 NC_001847.1 + 103883 0.75 0.4797
Target:  5'- cCUgGUcCGCGUcccaguccACGCCGGGcGCCGCGGc -3'
miRNA:   3'- -GAgCAuGUGCA--------UGUGGCCC-UGGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.