miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6650 3' -56 NC_001847.1 + 97283 1.12 0.002236
Target:  5'- aCUCGUACACGUACACCGGGACCGCGGg -3'
miRNA:   3'- -GAGCAUGUGCAUGUGGCCCUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 44739 0.8 0.237905
Target:  5'- cCUCGUggcccgccacaaGCACGUACgGCCgGGGGCCGUGGu -3'
miRNA:   3'- -GAGCA------------UGUGCAUG-UGG-CCCUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 30426 0.8 0.261534
Target:  5'- gCUCGUggcggGCGCGgagGCGCCGGGGCUGCa- -3'
miRNA:   3'- -GAGCA-----UGUGCa--UGUGGCCCUGGCGcc -5'
6650 3' -56 NC_001847.1 + 96622 0.79 0.274048
Target:  5'- ---uUGCGCGUGCGCgGGGGCCgGCGGg -3'
miRNA:   3'- gagcAUGUGCAUGUGgCCCUGG-CGCC- -5'
6650 3' -56 NC_001847.1 + 131934 0.79 0.287037
Target:  5'- -gCGgagGCACGUGCGCCGGcGAUgGCGGc -3'
miRNA:   3'- gaGCa--UGUGCAUGUGGCC-CUGgCGCC- -5'
6650 3' -56 NC_001847.1 + 32895 0.79 0.300506
Target:  5'- cCUCGgggGCcgGCGgggaaGCCGGGGCCGCGGa -3'
miRNA:   3'- -GAGCa--UG--UGCaug--UGGCCCUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 1406 0.79 0.300506
Target:  5'- aCUCGcgcggcgGCACGgGCACCGcGGugCGCGGg -3'
miRNA:   3'- -GAGCa------UGUGCaUGUGGC-CCugGCGCC- -5'
6650 3' -56 NC_001847.1 + 104219 0.79 0.300506
Target:  5'- aCUCGcgcggcgGCACGgGCACCGcGGugCGCGGg -3'
miRNA:   3'- -GAGCa------UGUGCaUGUGGC-CCugGCGCC- -5'
6650 3' -56 NC_001847.1 + 118886 0.79 0.300506
Target:  5'- gCUCgGUGCACGgg-GCCGGGGCCGgGGc -3'
miRNA:   3'- -GAG-CAUGUGCaugUGGCCCUGGCgCC- -5'
6650 3' -56 NC_001847.1 + 96672 0.78 0.343815
Target:  5'- --gGUACGCGUcguGCGCgGGGGCCgGCGGg -3'
miRNA:   3'- gagCAUGUGCA---UGUGgCCCUGG-CGCC- -5'
6650 3' -56 NC_001847.1 + 96645 0.78 0.343815
Target:  5'- --gGUACGCGUcguGCGCgGGGGCCgGCGGg -3'
miRNA:   3'- gagCAUGUGCA---UGUGgCCCUGG-CGCC- -5'
6650 3' -56 NC_001847.1 + 33221 0.77 0.375094
Target:  5'- gCUCGgcUugGCGccGCGCCGGGcGCCGCGGc -3'
miRNA:   3'- -GAGC--AugUGCa-UGUGGCCC-UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 3860 0.76 0.408241
Target:  5'- -aCGUAgACG-GCGCCGGGGCUGCGc -3'
miRNA:   3'- gaGCAUgUGCaUGUGGCCCUGGCGCc -5'
6650 3' -56 NC_001847.1 + 28681 0.76 0.428988
Target:  5'- -aCGUGCGCGUAUcggcggcgcuggccuACCGGGACCccuuugugcGCGGc -3'
miRNA:   3'- gaGCAUGUGCAUG---------------UGGCCCUGG---------CGCC- -5'
6650 3' -56 NC_001847.1 + 130912 0.75 0.44316
Target:  5'- gCUCGUGCcgGCGcGCGCCGGcACCGCGc -3'
miRNA:   3'- -GAGCAUG--UGCaUGUGGCCcUGGCGCc -5'
6650 3' -56 NC_001847.1 + 52265 0.75 0.45215
Target:  5'- uUCGUGCucGCGUgcccgcGCGCCGGcuuugugugcgcGACCGCGGg -3'
miRNA:   3'- gAGCAUG--UGCA------UGUGGCC------------CUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 90302 0.75 0.470423
Target:  5'- cCUCGgcgagcGCGCGUucgguggggcCGCCGGGGCCGgGGg -3'
miRNA:   3'- -GAGCa-----UGUGCAu---------GUGGCCCUGGCgCC- -5'
6650 3' -56 NC_001847.1 + 83341 0.75 0.470423
Target:  5'- aUCGacaUGCugGUcuGCgACCGGGACgCGCGGg -3'
miRNA:   3'- gAGC---AUGugCA--UG-UGGCCCUG-GCGCC- -5'
6650 3' -56 NC_001847.1 + 103883 0.75 0.4797
Target:  5'- cCUgGUcCGCGUcccaguccACGCCGGGcGCCGCGGc -3'
miRNA:   3'- -GAgCAuGUGCA--------UGUGGCCC-UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 41604 0.75 0.4797
Target:  5'- gCUCG-GCACGUaacccgggcGCuCCGGGGCCGcCGGg -3'
miRNA:   3'- -GAGCaUGUGCA---------UGuGGCCCUGGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.