miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6650 3' -56 NC_001847.1 + 870 0.69 0.774025
Target:  5'- cCUCcacGCGCGgcggcggcccGCGCCGGGgccGCCGCGGc -3'
miRNA:   3'- -GAGca-UGUGCa---------UGUGGCCC---UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 1070 0.75 0.4797
Target:  5'- cCUgGUcCGCGUcccaguccACGCCGGGcGCCGCGGc -3'
miRNA:   3'- -GAgCAuGUGCA--------UGUGGCCC-UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 1406 0.79 0.300506
Target:  5'- aCUCGcgcggcgGCACGgGCACCGcGGugCGCGGg -3'
miRNA:   3'- -GAGCa------UGUGCaUGUGGC-CCugGCGCC- -5'
6650 3' -56 NC_001847.1 + 1529 0.66 0.918261
Target:  5'- cCUCGgcgcGCGCGaagGCGcCCGGGccgaagacgcGCCGCGa -3'
miRNA:   3'- -GAGCa---UGUGCa--UGU-GGCCC----------UGGCGCc -5'
6650 3' -56 NC_001847.1 + 1599 0.68 0.858657
Target:  5'- gCUCGggccaGCGCGcggcgcacUGCGCCGcGGcagcACCGCGGc -3'
miRNA:   3'- -GAGCa----UGUGC--------AUGUGGC-CC----UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 1649 0.69 0.792199
Target:  5'- --gGUACACGUGCgccugcccgacgGCCGGGccguCgCGCGGc -3'
miRNA:   3'- gagCAUGUGCAUG------------UGGCCCu---G-GCGCC- -5'
6650 3' -56 NC_001847.1 + 2519 0.68 0.858657
Target:  5'- cCUCGcGCuu-UGCuGCCGGG-CCGCGGg -3'
miRNA:   3'- -GAGCaUGugcAUG-UGGCCCuGGCGCC- -5'
6650 3' -56 NC_001847.1 + 2968 0.69 0.801081
Target:  5'- cCUCG-GCGCGcagcgcCGCCGGGGCCgGCGc -3'
miRNA:   3'- -GAGCaUGUGCau----GUGGCCCUGG-CGCc -5'
6650 3' -56 NC_001847.1 + 3250 0.66 0.906574
Target:  5'- gCUCGccggcgGCAgGgGCGCCGGcGCCGCGcGg -3'
miRNA:   3'- -GAGCa-----UGUgCaUGUGGCCcUGGCGC-C- -5'
6650 3' -56 NC_001847.1 + 3631 0.68 0.843101
Target:  5'- gUCGcggcGCGCGUACACCaGGuccaccagcGCCGCGu -3'
miRNA:   3'- gAGCa---UGUGCAUGUGGcCC---------UGGCGCc -5'
6650 3' -56 NC_001847.1 + 3860 0.76 0.408241
Target:  5'- -aCGUAgACG-GCGCCGGGGCUGCGc -3'
miRNA:   3'- gaGCAUgUGCaUGUGGCCCUGGCGCc -5'
6650 3' -56 NC_001847.1 + 3923 0.67 0.893975
Target:  5'- -cCGguUGCGCGcccGCGCUGGcGCCGCGGc -3'
miRNA:   3'- gaGC--AUGUGCa--UGUGGCCcUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 4956 0.67 0.892008
Target:  5'- cCUCGcUAuCGCGcGCGCCGGGggggcagcugggguGCgGCGGc -3'
miRNA:   3'- -GAGC-AU-GUGCaUGUGGCCC--------------UGgCGCC- -5'
6650 3' -56 NC_001847.1 + 5711 0.67 0.893975
Target:  5'- --aGUuCAgGUGCGCCuGGGAgggcuuaccugcCCGCGGg -3'
miRNA:   3'- gagCAuGUgCAUGUGG-CCCU------------GGCGCC- -5'
6650 3' -56 NC_001847.1 + 6333 0.69 0.809813
Target:  5'- -aCGUACGCGggUGCcCCGGcGgcaaccgcGCCGCGGg -3'
miRNA:   3'- gaGCAUGUGC--AUGuGGCC-C--------UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 8458 0.68 0.835041
Target:  5'- gUCGgAgGCG-GCGCCGGG-CCGgGGg -3'
miRNA:   3'- gAGCaUgUGCaUGUGGCCCuGGCgCC- -5'
6650 3' -56 NC_001847.1 + 8536 0.67 0.876271
Target:  5'- -gUGUucuCACGUGgggucccgagagggcUACCGGGACgGUGGg -3'
miRNA:   3'- gaGCAu--GUGCAU---------------GUGGCCCUGgCGCC- -5'
6650 3' -56 NC_001847.1 + 11514 0.67 0.893975
Target:  5'- -gCGggaacugGCACGUAgcCGCCGGGuGCUGCGu -3'
miRNA:   3'- gaGCa------UGUGCAU--GUGGCCC-UGGCGCc -5'
6650 3' -56 NC_001847.1 + 11722 0.68 0.843101
Target:  5'- uUCGgcgGCACGUaugacGCGCUgcuggGGGACCGCc- -3'
miRNA:   3'- gAGCa--UGUGCA-----UGUGG-----CCCUGGCGcc -5'
6650 3' -56 NC_001847.1 + 11887 0.67 0.86614
Target:  5'- -gUGUAauCugGUGCgGCCGGGGuCCGCGc -3'
miRNA:   3'- gaGCAU--GugCAUG-UGGCCCU-GGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.