miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 3' -61.3 NC_001847.1 + 67272 0.66 0.608587
Target:  5'- gGGGUgccgccguucCCAGCgcgucgcgaGCGCGCgCGCCAGcGCc- -3'
miRNA:   3'- -CCCAa---------GGUCG---------UGCGCG-GCGGUC-CGaa -5'
6651 3' -61.3 NC_001847.1 + 131174 0.66 0.608587
Target:  5'- cGGGcccCCGGCGCccuCGCCGCCGgagacGGCg- -3'
miRNA:   3'- -CCCaa-GGUCGUGc--GCGGCGGU-----CCGaa -5'
6651 3' -61.3 NC_001847.1 + 104201 0.66 0.628732
Target:  5'- -----gCAGCACGCGCUGCC-GGUa- -3'
miRNA:   3'- cccaagGUCGUGCGCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 74119 0.66 0.614626
Target:  5'- cGGUUCCcggccguggugcuGCGCGUGgCGCCgGGGCg- -3'
miRNA:   3'- cCCAAGGu------------CGUGCGCgGCGG-UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 31070 0.66 0.607581
Target:  5'- uGGGUUuucgcaaCCAGUACgacgcgGCGCUgggGCCGGGCa- -3'
miRNA:   3'- -CCCAA-------GGUCGUG------CGCGG---CGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 62140 0.66 0.595525
Target:  5'- uGGUUCCGcGCcCGCGCUGCggccagcucccgcgCGGGCg- -3'
miRNA:   3'- cCCAAGGU-CGuGCGCGGCG--------------GUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 107184 0.66 0.625708
Target:  5'- ---cUCCAccgcgaccgcgagcGCGCGCGCCGCggccCAGGCg- -3'
miRNA:   3'- cccaAGGU--------------CGUGCGCGGCG----GUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 85363 0.66 0.598536
Target:  5'- cGGGggCgUGGCAaGCGUCGCCAGcGCg- -3'
miRNA:   3'- -CCCaaG-GUCGUgCGCGGCGGUC-CGaa -5'
6651 3' -61.3 NC_001847.1 + 101385 0.66 0.598536
Target:  5'- gGGGgcugCCcGCG-GCGCCGCC-GGCa- -3'
miRNA:   3'- -CCCaa--GGuCGUgCGCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 132879 0.66 0.588509
Target:  5'- cGGcUUCCGcCGCGUGCCGCCcgGGGaCUa -3'
miRNA:   3'- cCC-AAGGUcGUGCGCGGCGG--UCC-GAa -5'
6651 3' -61.3 NC_001847.1 + 99745 0.66 0.588509
Target:  5'- cGGGUgcguuggCCGGCcCGgcagugaGCCGCCGcGGCUUu -3'
miRNA:   3'- -CCCAa------GGUCGuGCg------CGGCGGU-CCGAA- -5'
6651 3' -61.3 NC_001847.1 + 124906 0.66 0.618654
Target:  5'- cGGGc-CCGGCAgGCG-CGCCGGGg-- -3'
miRNA:   3'- -CCCaaGGUCGUgCGCgGCGGUCCgaa -5'
6651 3' -61.3 NC_001847.1 + 133616 0.66 0.598536
Target:  5'- cGGGcgCCuucGCGCGCGCCG--AGGCc- -3'
miRNA:   3'- -CCCaaGGu--CGUGCGCGGCggUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 89757 0.66 0.608587
Target:  5'- cGGGcUgCGGCACGUGCacgCGCC-GGCg- -3'
miRNA:   3'- -CCCaAgGUCGUGCGCG---GCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 115867 0.66 0.598536
Target:  5'- aGGgaCCGGagguCGCGCCGCC-GGCc- -3'
miRNA:   3'- cCCaaGGUCgu--GCGCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 50064 0.66 0.618654
Target:  5'- cGGG-UCC-GCGCGCGgCGCggaccCGGGCg- -3'
miRNA:   3'- -CCCaAGGuCGUGCGCgGCG-----GUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 96346 0.66 0.618654
Target:  5'- cGGGcuggCguGCgACGCGCUGCC-GGCa- -3'
miRNA:   3'- -CCCaa--GguCG-UGCGCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 86503 0.66 0.638812
Target:  5'- cGGGggCggCGGCGCccCGCCGCCGcGGCg- -3'
miRNA:   3'- -CCCaaG--GUCGUGc-GCGGCGGU-CCGaa -5'
6651 3' -61.3 NC_001847.1 + 93056 0.66 0.608587
Target:  5'- cGGUgCCGGCACcgcgaggccgauGCGCCGCagcGGCa- -3'
miRNA:   3'- cCCAaGGUCGUG------------CGCGGCGgu-CCGaa -5'
6651 3' -61.3 NC_001847.1 + 48398 0.66 0.608587
Target:  5'- cGGGccUCGGCggcaaagcgggACGCGUCGCCGGcGCUc -3'
miRNA:   3'- -CCCaaGGUCG-----------UGCGCGGCGGUC-CGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.