miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 3' -61.3 NC_001847.1 + 3 0.66 0.628732
Target:  5'- ---cUCCGcGC-CGCGCCGCgCGGGCc- -3'
miRNA:   3'- cccaAGGU-CGuGCGCGGCG-GUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 986 0.69 0.463054
Target:  5'- gGGGcUUCCgccgcggcggcGGCACGCGCUccaCCAGGCc- -3'
miRNA:   3'- -CCC-AAGG-----------UCGUGCGCGGc--GGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 1211 0.81 0.074565
Target:  5'- cGGGcgccagcUCCAGCGCGCGCCGCCcgcAGGCc- -3'
miRNA:   3'- -CCCa------AGGUCGUGCGCGGCGG---UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 1388 0.66 0.628732
Target:  5'- -----gCAGCACGCGCUGCC-GGUa- -3'
miRNA:   3'- cccaagGUCGUGCGCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 1571 0.68 0.481539
Target:  5'- aGG--CCAGCACgGCGCgCGCCAGcGCg- -3'
miRNA:   3'- cCCaaGGUCGUG-CGCG-GCGGUC-CGaa -5'
6651 3' -61.3 NC_001847.1 + 1946 0.69 0.444949
Target:  5'- cGGGccgCCGGCGCuCGUccuCGCCGGGCg- -3'
miRNA:   3'- -CCCaa-GGUCGUGcGCG---GCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 2023 0.73 0.250778
Target:  5'- aGGUuuUCCAGCACgGCGCCGgCCGuGGCc- -3'
miRNA:   3'- cCCA--AGGUCGUG-CGCGGC-GGU-CCGaa -5'
6651 3' -61.3 NC_001847.1 + 2033 0.72 0.304033
Target:  5'- gGGGUccgcgaucugcgacaUCCAGgcCACGCGCCGCCGcagcgguGGCg- -3'
miRNA:   3'- -CCCA---------------AGGUC--GUGCGCGGCGGU-------CCGaa -5'
6651 3' -61.3 NC_001847.1 + 2167 0.71 0.315958
Target:  5'- aGGUcUCgCAGCGCccGCGCCGCCuGGGCg- -3'
miRNA:   3'- cCCA-AG-GUCGUG--CGCGGCGG-UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 2221 0.69 0.444949
Target:  5'- aGGccgCCAGCGcCGCGgCGCUGGGCg- -3'
miRNA:   3'- cCCaa-GGUCGU-GCGCgGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 2534 0.7 0.376751
Target:  5'- cGGacCCGGCgGCGCucccGCCGCCGGGCc- -3'
miRNA:   3'- cCCaaGGUCG-UGCG----CGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 2577 0.71 0.353057
Target:  5'- cGGGcgCCuGCGCG-GCCGCCGcGGCc- -3'
miRNA:   3'- -CCCaaGGuCGUGCgCGGCGGU-CCGaa -5'
6651 3' -61.3 NC_001847.1 + 2799 0.66 0.628732
Target:  5'- aGGGccgCgAGCGCG-GCCGCCAGccGCg- -3'
miRNA:   3'- -CCCaa-GgUCGUGCgCGGCGGUC--CGaa -5'
6651 3' -61.3 NC_001847.1 + 2843 0.67 0.529212
Target:  5'- cGGGcugaaCAGCGCGCG-CGCCAGcGCc- -3'
miRNA:   3'- -CCCaag--GUCGUGCGCgGCGGUC-CGaa -5'
6651 3' -61.3 NC_001847.1 + 2918 0.72 0.288454
Target:  5'- cGGGgccaCGGUcCGCGCCGCCAGcGCg- -3'
miRNA:   3'- -CCCaag-GUCGuGCGCGGCGGUC-CGaa -5'
6651 3' -61.3 NC_001847.1 + 2951 0.67 0.529212
Target:  5'- ---cUCCAGCGCgGCgGCCGCCucGGCg- -3'
miRNA:   3'- cccaAGGUCGUG-CG-CGGCGGu-CCGaa -5'
6651 3' -61.3 NC_001847.1 + 3067 0.71 0.313829
Target:  5'- cGGGUgcgccgccagcgcgUCCGGCGCGCaggccgcgGCCGgCAGGCc- -3'
miRNA:   3'- -CCCA--------------AGGUCGUGCG--------CGGCgGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 3214 0.68 0.472251
Target:  5'- ----gCCGGCGCacgugccuccGCGCCGCCGcGGCUUg -3'
miRNA:   3'- cccaaGGUCGUG----------CGCGGCGGU-CCGAA- -5'
6651 3' -61.3 NC_001847.1 + 3264 0.73 0.269085
Target:  5'- gGGGcgCCGGCGcCGCGCgGCC-GGCg- -3'
miRNA:   3'- -CCCaaGGUCGU-GCGCGgCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 3349 0.67 0.568555
Target:  5'- cGGGUaggCCaugggGGCguacGCGCGCCGC-AGGCUc -3'
miRNA:   3'- -CCCAa--GG-----UCG----UGCGCGGCGgUCCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.