miRNA display CGI


Results 1 - 20 of 355 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 3' -61.3 NC_001847.1 + 98483 1.07 0.001049
Target:  5'- cGGGUUCCAGCACGCGCCGCCAGGCUUc -3'
miRNA:   3'- -CCCAAGGUCGUGCGCGGCGGUCCGAA- -5'
6651 3' -61.3 NC_001847.1 + 1211 0.81 0.074565
Target:  5'- cGGGcgccagcUCCAGCGCGCGCCGCCcgcAGGCc- -3'
miRNA:   3'- -CCCa------AGGUCGUGCGCGGCGG---UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 104024 0.81 0.074565
Target:  5'- cGGGcgccagcUCCAGCGCGCGCCGCCcgcAGGCc- -3'
miRNA:   3'- -CCCa------AGGUCGUGCGCGGCGG---UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 86201 0.81 0.076354
Target:  5'- gGGGgcggUCCAGuCGCGCGCCugcgcccGCCAGGCUa -3'
miRNA:   3'- -CCCa---AGGUC-GUGCGCGG-------CGGUCCGAa -5'
6651 3' -61.3 NC_001847.1 + 99839 0.8 0.085036
Target:  5'- --cUUCCAGCGCGCGCCGCUcggcgGGGCUg -3'
miRNA:   3'- cccAAGGUCGUGCGCGGCGG-----UCCGAa -5'
6651 3' -61.3 NC_001847.1 + 71389 0.78 0.113197
Target:  5'- cGGGc-CUGGCcCGCGCCGCCAGGCg- -3'
miRNA:   3'- -CCCaaGGUCGuGCGCGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 80547 0.77 0.13544
Target:  5'- cGGcgCgGGCGCGCGCCGCCAGcGCc- -3'
miRNA:   3'- cCCaaGgUCGUGCGCGGCGGUC-CGaa -5'
6651 3' -61.3 NC_001847.1 + 53160 0.76 0.161639
Target:  5'- --cUUCCAGCugGCGCUGCuCGGGCg- -3'
miRNA:   3'- cccAAGGUCGugCGCGGCG-GUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 11515 0.76 0.174208
Target:  5'- cGGGaaCUGGCACGUaGCCGCCGGGUg- -3'
miRNA:   3'- -CCCaaGGUCGUGCG-CGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 35489 0.76 0.175948
Target:  5'- uGGGgUCCGGCGCGCGUuaugcucggcgugcgCGCCGgGGCUUg -3'
miRNA:   3'- -CCCaAGGUCGUGCGCG---------------GCGGU-CCGAA- -5'
6651 3' -61.3 NC_001847.1 + 86990 0.75 0.178588
Target:  5'- cGGG--CCGGCGCGCGCCGgCCcGGCg- -3'
miRNA:   3'- -CCCaaGGUCGUGCGCGGC-GGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 31014 0.75 0.187641
Target:  5'- cGGcGUUgCCGGCGCGCGCgCGCC-GGCa- -3'
miRNA:   3'- -CC-CAA-GGUCGUGCGCG-GCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 104120 0.75 0.187641
Target:  5'- cGGcGUUgCCGGCGCGCGCgCGCC-GGCa- -3'
miRNA:   3'- -CC-CAA-GGUCGUGCGCG-GCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 100550 0.75 0.192317
Target:  5'- cGGGgagCCGGC-CGCggcgauuauuGCCGCCAGGCg- -3'
miRNA:   3'- -CCCaa-GGUCGuGCG----------CGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 44404 0.75 0.192317
Target:  5'- cGGGgcCCGGcCACGCGCCGCgAgcGGCUg -3'
miRNA:   3'- -CCCaaGGUC-GUGCGCGGCGgU--CCGAa -5'
6651 3' -61.3 NC_001847.1 + 45507 0.75 0.192317
Target:  5'- cGGggCgGGCGC-CGCCGCCGGGCg- -3'
miRNA:   3'- cCCaaGgUCGUGcGCGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 52537 0.75 0.197095
Target:  5'- ---cUCCAGCGCGCGgCGCaCAGGCg- -3'
miRNA:   3'- cccaAGGUCGUGCGCgGCG-GUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 132384 0.75 0.201977
Target:  5'- gGGGcgCCGGCGCcgGCGCCGCCgcgccGGGCc- -3'
miRNA:   3'- -CCCaaGGUCGUG--CGCGGCGG-----UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 29571 0.75 0.201977
Target:  5'- gGGGcgCCGGCGCcgGCGCCGCCgcgccGGGCc- -3'
miRNA:   3'- -CCCaaGGUCGUG--CGCGGCGG-----UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 69130 0.74 0.206963
Target:  5'- aGG-UCCAGCGCG-GCCGCCGuGGCg- -3'
miRNA:   3'- cCCaAGGUCGUGCgCGGCGGU-CCGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.