miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 3' -61.3 NC_001847.1 + 95365 0.72 0.281878
Target:  5'- cGGGggCUGGCGgcggacCGCGCCGCC-GGCUc -3'
miRNA:   3'- -CCCaaGGUCGU------GCGCGGCGGuCCGAa -5'
6651 3' -61.3 NC_001847.1 + 18745 0.74 0.233511
Target:  5'- cGGGgcCCAGaGCGcCGCCGCCGcGGCUa -3'
miRNA:   3'- -CCCaaGGUCgUGC-GCGGCGGU-CCGAa -5'
6651 3' -61.3 NC_001847.1 + 2023 0.73 0.250778
Target:  5'- aGGUuuUCCAGCACgGCGCCGgCCGuGGCc- -3'
miRNA:   3'- cCCA--AGGUCGUG-CGCGGC-GGU-CCGaa -5'
6651 3' -61.3 NC_001847.1 + 59309 0.73 0.250778
Target:  5'- aGGGUgCCAGgGCGCGgCGCC-GGCg- -3'
miRNA:   3'- -CCCAaGGUCgUGCGCgGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 34524 0.73 0.250778
Target:  5'- cGGcgCCGGCgAUGCGCCGCCcgccGGGCg- -3'
miRNA:   3'- cCCaaGGUCG-UGCGCGGCGG----UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 4230 0.73 0.256764
Target:  5'- cGGUgCCGGCGCGCGCCGgCAcGaGCUg -3'
miRNA:   3'- cCCAaGGUCGUGCGCGGCgGU-C-CGAa -5'
6651 3' -61.3 NC_001847.1 + 106626 0.73 0.262866
Target:  5'- cGGGcggCGGCgGCGCGCUGCCGGGCc- -3'
miRNA:   3'- -CCCaagGUCG-UGCGCGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 35638 0.73 0.269085
Target:  5'- uGGggCCAGCGCuggaccGCGCCGCCucGGCg- -3'
miRNA:   3'- cCCaaGGUCGUG------CGCGGCGGu-CCGaa -5'
6651 3' -61.3 NC_001847.1 + 106077 0.73 0.269085
Target:  5'- gGGGcgCCGGCGcCGCGCgGCC-GGCg- -3'
miRNA:   3'- -CCCaaGGUCGU-GCGCGgCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 124576 0.74 0.227982
Target:  5'- gGGGgccgCCGGCGCcgggcccgGCGCCgGCCGGGCg- -3'
miRNA:   3'- -CCCaa--GGUCGUG--------CGCGG-CGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 48156 0.74 0.222563
Target:  5'- cGGG--CCGGCGCGCGCCGgCCcGGCc- -3'
miRNA:   3'- -CCCaaGGUCGUGCGCGGC-GGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 38025 0.74 0.217255
Target:  5'- cGGGUgcugUgGGCGCGCGCCGCCGcGCc- -3'
miRNA:   3'- -CCCAa---GgUCGUGCGCGGCGGUcCGaa -5'
6651 3' -61.3 NC_001847.1 + 104024 0.81 0.074565
Target:  5'- cGGGcgccagcUCCAGCGCGCGCCGCCcgcAGGCc- -3'
miRNA:   3'- -CCCa------AGGUCGUGCGCGGCGG---UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 53160 0.76 0.161639
Target:  5'- --cUUCCAGCugGCGCUGCuCGGGCg- -3'
miRNA:   3'- cccAAGGUCGugCGCGGCG-GUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 31014 0.75 0.187641
Target:  5'- cGGcGUUgCCGGCGCGCGCgCGCC-GGCa- -3'
miRNA:   3'- -CC-CAA-GGUCGUGCGCG-GCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 45507 0.75 0.192317
Target:  5'- cGGggCgGGCGC-CGCCGCCGGGCg- -3'
miRNA:   3'- cCCaaGgUCGUGcGCGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 44404 0.75 0.192317
Target:  5'- cGGGgcCCGGcCACGCGCCGCgAgcGGCUg -3'
miRNA:   3'- -CCCaaGGUC-GUGCGCGGCGgU--CCGAa -5'
6651 3' -61.3 NC_001847.1 + 100550 0.75 0.192317
Target:  5'- cGGGgagCCGGC-CGCggcgauuauuGCCGCCAGGCg- -3'
miRNA:   3'- -CCCaa-GGUCGuGCG----------CGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 132384 0.75 0.201977
Target:  5'- gGGGcgCCGGCGCcgGCGCCGCCgcgccGGGCc- -3'
miRNA:   3'- -CCCaaGGUCGUG--CGCGGCGG-----UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 39626 0.74 0.212055
Target:  5'- aGGGgcaagCCuGGCGCGC-CCGCCAGGCc- -3'
miRNA:   3'- -CCCaa---GG-UCGUGCGcGGCGGUCCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.