Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6651 | 5' | -54.1 | NC_001847.1 | + | 73918 | 0.66 | 0.932936 |
Target: 5'- cCCGAagcGUUCgaGGUGGaGAuuGUGCUCCCCGg -3' miRNA: 3'- -GGUU---UAAG--UCGCCgCU--UACGGGGGGU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 92514 | 0.66 | 0.947274 |
Target: 5'- aCGAcgUCGGCGcUGcc-GCCCCCCu -3' miRNA: 3'- gGUUuaAGUCGCcGCuuaCGGGGGGu -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 4918 | 0.66 | 0.932936 |
Target: 5'- aCCGAccgcgcCGGCGGCaacagcGCCCCCCc -3' miRNA: 3'- -GGUUuaa---GUCGCCGcuua--CGGGGGGu -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 8315 | 0.66 | 0.937963 |
Target: 5'- gCCAGGcugUCGGCaGGaCGAucaGCCCCCgAa -3' miRNA: 3'- -GGUUUa--AGUCG-CC-GCUua-CGGGGGgU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 3066 | 0.66 | 0.939904 |
Target: 5'- gCAGGUUgugcucguagugcagCAGC-GCGAugacGCCCCCCAc -3' miRNA: 3'- gGUUUAA---------------GUCGcCGCUua--CGGGGGGU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 56890 | 0.66 | 0.92766 |
Target: 5'- uCCAGGUgc-GCGGCGAcgucgGCCUCCa- -3' miRNA: 3'- -GGUUUAaguCGCCGCUua---CGGGGGgu -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 33122 | 0.66 | 0.932936 |
Target: 5'- gCCGAccgcggCGGCGGCGAGcGCUUCCg- -3' miRNA: 3'- -GGUUuaa---GUCGCCGCUUaCGGGGGgu -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 31831 | 0.66 | 0.92766 |
Target: 5'- aCAGGggggUUGGCGcGCGGccGCCCCgCCGc -3' miRNA: 3'- gGUUUa---AGUCGC-CGCUuaCGGGG-GGU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 102706 | 0.66 | 0.937963 |
Target: 5'- gCCGGGcg-GGCGGCGAAaggcccgcaCCCCCCGg -3' miRNA: 3'- -GGUUUaagUCGCCGCUUac-------GGGGGGU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 46869 | 0.66 | 0.947274 |
Target: 5'- ------cCAGCaGGCGAAgcgcuCCCCCCGu -3' miRNA: 3'- gguuuaaGUCG-CCGCUUac---GGGGGGU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 27721 | 0.66 | 0.92766 |
Target: 5'- gCAAGggcgUCAGCGGCGGAaGCCgCg-- -3' miRNA: 3'- gGUUUa---AGUCGCCGCUUaCGGgGggu -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 44801 | 0.66 | 0.942742 |
Target: 5'- aCGAcggCGGCuuuGGCGGcUGCgCCCCCGg -3' miRNA: 3'- gGUUuaaGUCG---CCGCUuACG-GGGGGU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 42735 | 0.66 | 0.947274 |
Target: 5'- gCGAGUUCGGgcUGGC----GCCCCCCu -3' miRNA: 3'- gGUUUAAGUC--GCCGcuuaCGGGGGGu -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 81536 | 0.66 | 0.947274 |
Target: 5'- gCAuccGUUCGGCGGcCGAGcucgccgGCCCCgCGc -3' miRNA: 3'- gGUu--UAAGUCGCC-GCUUa------CGGGGgGU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 64440 | 0.66 | 0.932936 |
Target: 5'- gUCGuagUCGGCGGCcAcgGCCagCCCCGg -3' miRNA: 3'- -GGUuuaAGUCGCCGcUuaCGG--GGGGU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 120021 | 0.66 | 0.92766 |
Target: 5'- cCCGGGUg-AGCGGCcuagGCCCUCCc -3' miRNA: 3'- -GGUUUAagUCGCCGcuuaCGGGGGGu -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 134644 | 0.66 | 0.92766 |
Target: 5'- aCAGGggggUUGGCGcGCGGccGCCCCgCCGc -3' miRNA: 3'- gGUUUa---AGUCGC-CGCUuaCGGGG-GGU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 80740 | 0.66 | 0.932936 |
Target: 5'- gCCAAccgCGGCGGCGcccgccucgcccGcgGCCgCCCGc -3' miRNA: 3'- -GGUUuaaGUCGCCGC------------UuaCGGgGGGU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 20651 | 0.66 | 0.937963 |
Target: 5'- gCCAAAggggcUCAGCagGGCGGAgacGUCCgCCAg -3' miRNA: 3'- -GGUUUa----AGUCG--CCGCUUa--CGGGgGGU- -5' |
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6651 | 5' | -54.1 | NC_001847.1 | + | 100652 | 0.66 | 0.937963 |
Target: 5'- gCCAGGgccgcgcugCuGCGGCGGggGgUCCCCAg -3' miRNA: 3'- -GGUUUaa-------GuCGCCGCUuaCgGGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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