miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 5' -54.1 NC_001847.1 + 98517 1.11 0.002857
Target:  5'- gCCAAAUUCAGCGGCGAAUGCCCCCCAa -3'
miRNA:   3'- -GGUUUAAGUCGCCGCUUACGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 127062 0.78 0.362855
Target:  5'- gCCGAucUCGccGCGGCG-GUGCCCCCCu -3'
miRNA:   3'- -GGUUuaAGU--CGCCGCuUACGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 83066 0.75 0.498643
Target:  5'- aCGAggUUgcuGGCGGCGAagGUGCCCgCCCAc -3'
miRNA:   3'- gGUUuaAG---UCGCCGCU--UACGGG-GGGU- -5'
6651 5' -54.1 NC_001847.1 + 89068 0.74 0.559055
Target:  5'- gCCGGGuUUCGGCGGCGcucuuucGCCCgCCCAu -3'
miRNA:   3'- -GGUUU-AAGUCGCCGCuua----CGGG-GGGU- -5'
6651 5' -54.1 NC_001847.1 + 31346 0.74 0.559055
Target:  5'- gCCGccgcCGGCGGCGGAaGCCCCgCCGg -3'
miRNA:   3'- -GGUuuaaGUCGCCGCUUaCGGGG-GGU- -5'
6651 5' -54.1 NC_001847.1 + 134159 0.74 0.559055
Target:  5'- gCCGccgcCGGCGGCGGAaGCCCCgCCGg -3'
miRNA:   3'- -GGUuuaaGUCGCCGCUUaCGGGG-GGU- -5'
6651 5' -54.1 NC_001847.1 + 22808 0.73 0.61089
Target:  5'- gUAGAUgcgggcCGGCGGCGGccGCUCCCCGc -3'
miRNA:   3'- gGUUUAa-----GUCGCCGCUuaCGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 53874 0.73 0.621338
Target:  5'- gCCGAccgccgCGGgGGCGGcggGCCCCCCGu -3'
miRNA:   3'- -GGUUuaa---GUCgCCGCUua-CGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 53080 0.72 0.652697
Target:  5'- gCCGAgcccggcucagcGUUCGGCggGGCGGcgGCCCgCCAg -3'
miRNA:   3'- -GGUU------------UAAGUCG--CCGCUuaCGGGgGGU- -5'
6651 5' -54.1 NC_001847.1 + 9454 0.72 0.673533
Target:  5'- gCAGAacccCGGCGGCGA---CCCCCCAg -3'
miRNA:   3'- gGUUUaa--GUCGCCGCUuacGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 78350 0.72 0.673533
Target:  5'- gCCg----CGGCGGCGAAcaGCCCCUCGa -3'
miRNA:   3'- -GGuuuaaGUCGCCGCUUa-CGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 112267 0.72 0.673533
Target:  5'- gCAGAacccCGGCGGCGA---CCCCCCAg -3'
miRNA:   3'- gGUUUaa--GUCGCCGCUuacGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 96630 0.72 0.673533
Target:  5'- gCCAGAgcaCAGCgccGGCGAccgcgccGCCCCCCGg -3'
miRNA:   3'- -GGUUUaa-GUCG---CCGCUua-----CGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 21963 0.72 0.682867
Target:  5'- aCCGGGgggggcuUUCGGCGGCG---GCCCCCUc -3'
miRNA:   3'- -GGUUU-------AAGUCGCCGCuuaCGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 124776 0.72 0.682867
Target:  5'- aCCGGGgggggcuUUCGGCGGCG---GCCCCCUc -3'
miRNA:   3'- -GGUUU-------AAGUCGCCGCuuaCGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 92130 0.71 0.704498
Target:  5'- aCCuu-UUCGGCGGCccggcgcGCCCCCCc -3'
miRNA:   3'- -GGuuuAAGUCGCCGcuua---CGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 106660 0.71 0.714704
Target:  5'- gCCAGAaggcgUCAGCaGCGg--GCCCUCCAg -3'
miRNA:   3'- -GGUUUa----AGUCGcCGCuuaCGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 3847 0.71 0.714704
Target:  5'- gCCAGAaggcgUCAGCaGCGg--GCCCUCCAg -3'
miRNA:   3'- -GGUUUa----AGUCGcCGCuuaCGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 63282 0.71 0.724838
Target:  5'- cCCAGAUgagCGGCGGCGGAaGCaCCgggUCCAg -3'
miRNA:   3'- -GGUUUAa--GUCGCCGCUUaCG-GG---GGGU- -5'
6651 5' -54.1 NC_001847.1 + 126511 0.71 0.724838
Target:  5'- cCCGAGUccgCAGCGGCc---GCuCCCCCGg -3'
miRNA:   3'- -GGUUUAa--GUCGCCGcuuaCG-GGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.